miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 129120 0.7 0.965384
Target:  5'- cGGUCGCaguacuucccugCGACuuGAacGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCGaa----------GUUGuuUU--UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 128948 0.69 0.97987
Target:  5'- cGCCgGCUagggUCGAUGAGAucaugcucaaacucGAGCUCGGCc -3'
miRNA:   3'- uCGG-CGA----AGUUGUUUU--------------UUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 128151 0.68 0.99207
Target:  5'- cAGCCGCgggUCc----GAGGGCUUGGUGa -3'
miRNA:   3'- -UCGGCGa--AGuuguuUUUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 127566 0.67 0.993132
Target:  5'- aAGCCGaugagaUCAcgccCAAGcucGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCga----AGUu---GUUUu--UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 126567 0.73 0.895433
Target:  5'- cAGCCGCgggUCcGCG----GGCUUGGCGa -3'
miRNA:   3'- -UCGGCGa--AGuUGUuuuuUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 125557 0.72 0.91441
Target:  5'- uGCaCGCUUUAgacggaaggccggGCuuAGAAGCUUGGCGg -3'
miRNA:   3'- uCG-GCGAAGU-------------UGuuUUUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 123248 0.75 0.823514
Target:  5'- cGCCGUUgcgUCAACAGAucgaccGUUCGGCGg -3'
miRNA:   3'- uCGGCGA---AGUUGUUUuuu---CGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 121670 0.72 0.937462
Target:  5'- cGUCGCUcgCGGCGcccGGAuaccgguacgcGAGCUCGGCGg -3'
miRNA:   3'- uCGGCGAa-GUUGU---UUU-----------UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 119189 0.7 0.959618
Target:  5'- gAGCCGa--CGcCGAAGAAGCgCGGCGg -3'
miRNA:   3'- -UCGGCgaaGUuGUUUUUUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 119121 0.71 0.948899
Target:  5'- cGGCCGCgcuggUCAucgggcuguucgacuACAugGAGAAGCUgGGCa -3'
miRNA:   3'- -UCGGCGa----AGU---------------UGU--UUUUUCGAgCCGc -5'
7639 3' -49.3 NC_001973.1 + 115777 0.68 0.98646
Target:  5'- cAGCgCGCggcCGACAucAAAGCcagccUCGGCGa -3'
miRNA:   3'- -UCG-GCGaa-GUUGUuuUUUCG-----AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 112486 0.68 0.991957
Target:  5'- aGGCgCGUUUCGGCAGAAAgcccaccAGCUUgaGGCc -3'
miRNA:   3'- -UCG-GCGAAGUUGUUUUU-------UCGAG--CCGc -5'
7639 3' -49.3 NC_001973.1 + 109857 0.73 0.895433
Target:  5'- cGCCGCcgcCGACGAGGAcgcGGCgcgCGGCGu -3'
miRNA:   3'- uCGGCGaa-GUUGUUUUU---UCGa--GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 109452 0.71 0.947097
Target:  5'- uGGCCGCgUUCAggucgagcgugGCGAcguugcgcGAGAGCUUGGCc -3'
miRNA:   3'- -UCGGCG-AAGU-----------UGUU--------UUUUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 109364 0.67 0.993132
Target:  5'- cGGCCGUagcggUCGACGAGcgccucguAGGCgCGGCGc -3'
miRNA:   3'- -UCGGCGa----AGUUGUUUu-------UUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 109197 0.69 0.984669
Target:  5'- cGCCGCg-CAGCcggcccAGCUCGGCc -3'
miRNA:   3'- uCGGCGaaGUUGuuuuu-UCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 109147 0.67 0.994915
Target:  5'- cGCCGCcUCGACGAGccgggcGAGC-CGGUc -3'
miRNA:   3'- uCGGCGaAGUUGUUUu-----UUCGaGCCGc -5'
7639 3' -49.3 NC_001973.1 + 107429 0.68 0.988692
Target:  5'- -aCCGCUcuuuauauuuuuuacUgAACAAAAAacuuuugcAGCUCGGCGa -3'
miRNA:   3'- ucGGCGA---------------AgUUGUUUUU--------UCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 106594 0.71 0.955697
Target:  5'- cGCCGCcgUCaAGCGAAcGAGCgcgacCGGCGu -3'
miRNA:   3'- uCGGCGa-AG-UUGUUUuUUCGa----GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 106013 0.67 0.994078
Target:  5'- gGGCCGgUUCGcaucagacacgaAUAAAAcGGC-CGGCGg -3'
miRNA:   3'- -UCGGCgAAGU------------UGUUUUuUCGaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.