miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 5' -62.8 NC_001973.1 + 8433 0.7 0.41043
Target:  5'- cGCcGCGuCGuCGCGCCCgucgacgaaccgcUCGCCGaCCa -3'
miRNA:   3'- uCGaCGC-GCuGCGCGGG-------------AGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 23817 0.7 0.411252
Target:  5'- -----gGCGACGCgGCCCUCGCCGagUUCa -3'
miRNA:   3'- ucgacgCGCUGCG-CGGGAGCGGC--AGG- -5'
7640 5' -62.8 NC_001973.1 + 104234 0.7 0.411252
Target:  5'- cGCUcgGCGCGcuGCGCGUCCgucaGCUGUUCg -3'
miRNA:   3'- uCGA--CGCGC--UGCGCGGGag--CGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 86939 0.7 0.413723
Target:  5'- cAGgUGCGCguucgucgucaagccGACGgcgccguccgcccCGCCCgcggCGCCGUCCg -3'
miRNA:   3'- -UCgACGCG---------------CUGC-------------GCGGGa---GCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 5894 0.7 0.418692
Target:  5'- cAGCgcGCGCGACGCGaacgagaUCCUCGCguCGcCCg -3'
miRNA:   3'- -UCGa-CGCGCUGCGC-------GGGAGCG--GCaGG- -5'
7640 5' -62.8 NC_001973.1 + 5658 0.7 0.419524
Target:  5'- cGGCUGCGCucGCGCGUuuUCG-CGUCg -3'
miRNA:   3'- -UCGACGCGc-UGCGCGggAGCgGCAGg -5'
7640 5' -62.8 NC_001973.1 + 82911 0.7 0.42286
Target:  5'- cGCcGCGCccgaccgacgcguucGGCGCGCCgaUCGCCccGUCCg -3'
miRNA:   3'- uCGaCGCG---------------CUGCGCGGg-AGCGG--CAGG- -5'
7640 5' -62.8 NC_001973.1 + 88124 0.7 0.427895
Target:  5'- cGUUGCagauuguaCGcCGCGCCCUCGUCGgcggCCg -3'
miRNA:   3'- uCGACGc-------GCuGCGCGGGAGCGGCa---GG- -5'
7640 5' -62.8 NC_001973.1 + 140885 0.69 0.435513
Target:  5'- -uCUGCGCGGCGUcgcgcgcgacccaGCCCUCGCaccCCu -3'
miRNA:   3'- ucGACGCGCUGCG-------------CGGGAGCGgcaGG- -5'
7640 5' -62.8 NC_001973.1 + 25714 0.69 0.436365
Target:  5'- aAGCcuUGCGCG-C-CGCCCgCGCCG-CCg -3'
miRNA:   3'- -UCG--ACGCGCuGcGCGGGaGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 73596 0.69 0.436365
Target:  5'- cGGCUuuaGCGCGACccggGCGaUCaguucggacggCUCGCCGUCCg -3'
miRNA:   3'- -UCGA---CGCGCUG----CGC-GG-----------GAGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 51671 0.69 0.436365
Target:  5'- cGCggagGCGCGcGCGCGCgaucuCCUCGaCCG-CCa -3'
miRNA:   3'- uCGa---CGCGC-UGCGCG-----GGAGC-GGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 74812 0.69 0.44493
Target:  5'- cGCgagGCGCGucguGCGCGUgCUCGaCCGgcUCCa -3'
miRNA:   3'- uCGa--CGCGC----UGCGCGgGAGC-GGC--AGG- -5'
7640 5' -62.8 NC_001973.1 + 109381 0.69 0.44493
Target:  5'- gAGCgccucguagGCGCGGCGCacuugccuagGCgCCggcgCGUCGUCCa -3'
miRNA:   3'- -UCGa--------CGCGCUGCG----------CG-GGa---GCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 36776 0.69 0.450114
Target:  5'- aGGC-GCGCGACGCGCUCgcaaacuaucucgCGCUGaggaCCa -3'
miRNA:   3'- -UCGaCGCGCUGCGCGGGa------------GCGGCa---GG- -5'
7640 5' -62.8 NC_001973.1 + 81940 0.69 0.453589
Target:  5'- cGGCguccgGCGCGGagaaGCGCUg--GCCGUCCg -3'
miRNA:   3'- -UCGa----CGCGCUg---CGCGGgagCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 50275 0.69 0.462338
Target:  5'- uGGCUGCGgcacaugcgGAUGCGgCgCUUGCCGUUCa -3'
miRNA:   3'- -UCGACGCg--------CUGCGCgG-GAGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 52732 0.69 0.471176
Target:  5'- gAGC-GCcagGCGGCGCGUCUcgUCGUCGUCg -3'
miRNA:   3'- -UCGaCG---CGCUGCGCGGG--AGCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 135388 0.69 0.477413
Target:  5'- cAGCUacaucgcaaGgGCGGCGCGCUgggaagacgacaugUaCGCCGUCCa -3'
miRNA:   3'- -UCGA---------CgCGCUGCGCGG--------------GaGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 91634 0.69 0.480098
Target:  5'- uGGCUGCGgGucacacgaAUGCGuUuuUUGCCGUCCg -3'
miRNA:   3'- -UCGACGCgC--------UGCGC-GggAGCGGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.