Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7643 | 3' | -53.5 | NC_001973.1 | + | 56524 | 0.71 | 0.807552 |
Target: 5'- -cGGC--GCCaAGCUCGGGCGGGg-- -3' miRNA: 3'- gaCUGuuUGGaUCGAGCCUGCCCagg -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 22772 | 0.71 | 0.841649 |
Target: 5'- -cGACAucGACCUGG-UCGGGCGGcaGUUCa -3' miRNA: 3'- gaCUGU--UUGGAUCgAGCCUGCC--CAGG- -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 146073 | 0.72 | 0.780266 |
Target: 5'- -cGcCGAGCC-GGCUCGGGCGGG-Cg -3' miRNA: 3'- gaCuGUUUGGaUCGAGCCUGCCCaGg -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 23714 | 0.72 | 0.77089 |
Target: 5'- -cGcCAAGCCgcugGGCUCGcuGACGGGcCCg -3' miRNA: 3'- gaCuGUUUGGa---UCGAGC--CUGCCCaGG- -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 87685 | 0.73 | 0.73223 |
Target: 5'- -cGAUGAGCUgcuGCUCGGACaGGUCg -3' miRNA: 3'- gaCUGUUUGGau-CGAGCCUGcCCAGg -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 145996 | 0.76 | 0.54912 |
Target: 5'- ---uCGAGCC-GGCUCGGggaGCGGGUCCg -3' miRNA: 3'- gacuGUUUGGaUCGAGCC---UGCCCAGG- -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 154958 | 1.13 | 0.003315 |
Target: 5'- uCUGACAAACCUAGCUCGGACGGGUCCa -3' miRNA: 3'- -GACUGUUUGGAUCGAGCCUGCCCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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