Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7643 | 3' | -53.5 | NC_001973.1 | + | 145996 | 0.76 | 0.54912 |
Target: 5'- ---uCGAGCC-GGCUCGGggaGCGGGUCCg -3' miRNA: 3'- gacuGUUUGGaUCGAGCC---UGCCCAGG- -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 146073 | 0.72 | 0.780266 |
Target: 5'- -cGcCGAGCC-GGCUCGGGCGGG-Cg -3' miRNA: 3'- gaCuGUUUGGaUCGAGCCUGCCCaGg -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 146114 | 0.69 | 0.900234 |
Target: 5'- -cGGCGcugAGCC-GGCUCGGgaGCGGG-CCg -3' miRNA: 3'- gaCUGU---UUGGaUCGAGCC--UGCCCaGG- -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 150864 | 0.68 | 0.929404 |
Target: 5'- uCUGucCGGGCCUGGC-CGGAgcCGGGgcgcguUCCa -3' miRNA: 3'- -GACu-GUUUGGAUCGaGCCU--GCCC------AGG- -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 151199 | 0.69 | 0.906546 |
Target: 5'- aUGACAucauGCCUcGGCcggCGGugcCGGGUCUg -3' miRNA: 3'- gACUGUu---UGGA-UCGa--GCCu--GCCCAGG- -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 153342 | 0.66 | 0.968179 |
Target: 5'- cCUGAaaaucGCCaagAGCgaggucgauuucgacUCGGACGGGUCg -3' miRNA: 3'- -GACUguu--UGGa--UCG---------------AGCCUGCCCAGg -5' |
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7643 | 3' | -53.5 | NC_001973.1 | + | 154958 | 1.13 | 0.003315 |
Target: 5'- uCUGACAAACCUAGCUCGGACGGGUCCa -3' miRNA: 3'- -GACUGUUUGGAUCGAGCCUGCCCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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