miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7643 3' -53.5 NC_001973.1 + 145996 0.76 0.54912
Target:  5'- ---uCGAGCC-GGCUCGGggaGCGGGUCCg -3'
miRNA:   3'- gacuGUUUGGaUCGAGCC---UGCCCAGG- -5'
7643 3' -53.5 NC_001973.1 + 146073 0.72 0.780266
Target:  5'- -cGcCGAGCC-GGCUCGGGCGGG-Cg -3'
miRNA:   3'- gaCuGUUUGGaUCGAGCCUGCCCaGg -5'
7643 3' -53.5 NC_001973.1 + 146114 0.69 0.900234
Target:  5'- -cGGCGcugAGCC-GGCUCGGgaGCGGG-CCg -3'
miRNA:   3'- gaCUGU---UUGGaUCGAGCC--UGCCCaGG- -5'
7643 3' -53.5 NC_001973.1 + 150864 0.68 0.929404
Target:  5'- uCUGucCGGGCCUGGC-CGGAgcCGGGgcgcguUCCa -3'
miRNA:   3'- -GACu-GUUUGGAUCGaGCCU--GCCC------AGG- -5'
7643 3' -53.5 NC_001973.1 + 151199 0.69 0.906546
Target:  5'- aUGACAucauGCCUcGGCcggCGGugcCGGGUCUg -3'
miRNA:   3'- gACUGUu---UGGA-UCGa--GCCu--GCCCAGG- -5'
7643 3' -53.5 NC_001973.1 + 153342 0.66 0.968179
Target:  5'- cCUGAaaaucGCCaagAGCgaggucgauuucgacUCGGACGGGUCg -3'
miRNA:   3'- -GACUguu--UGGa--UCG---------------AGCCUGCCCAGg -5'
7643 3' -53.5 NC_001973.1 + 154958 1.13 0.003315
Target:  5'- uCUGACAAACCUAGCUCGGACGGGUCCa -3'
miRNA:   3'- -GACUGUUUGGAUCGAGCCUGCCCAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.