miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 53406 0.71 0.370816
Target:  5'- cGCCG-GCacggGCGGAgCGCCGGGCgCGUc -3'
miRNA:   3'- -CGGCuCGga--CGUCU-GCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 59967 0.71 0.378607
Target:  5'- cGCCGAuag-GCAGcCGCCGGGCCCa- -3'
miRNA:   3'- -CGGCUcggaCGUCuGCGGCUCGGGcg -5'
7645 5' -62.1 NC_001973.1 + 72285 0.71 0.378607
Target:  5'- cUCGAGCUcgGCGGACGCguaagauuuuaCGcGCCCGCu -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 105894 0.71 0.381754
Target:  5'- cGCCGAGCUgGCGcucgcccgccucgucGAUGCCGAaaaacucuucGUCCGCg -3'
miRNA:   3'- -CGGCUCGGaCGU---------------CUGCGGCU----------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 64627 0.71 0.386508
Target:  5'- cGCCGAGCaaaagacgGagaAGGCGCaCGAGgCCGCc -3'
miRNA:   3'- -CGGCUCGga------Cg--UCUGCG-GCUCgGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155315 0.71 0.386508
Target:  5'- cCUGAGCCcGCu--C-CCGAGCCCGCu -3'
miRNA:   3'- cGGCUCGGaCGucuGcGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 28717 0.71 0.394516
Target:  5'- -aUGAGCCgcgaCAGcuucuCGUCGAGCCCGCu -3'
miRNA:   3'- cgGCUCGGac--GUCu----GCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 159377 0.71 0.394516
Target:  5'- gGUCGA-CCUGCAGGCGCCGu-CCCu- -3'
miRNA:   3'- -CGGCUcGGACGUCUGCGGCucGGGcg -5'
7645 5' -62.1 NC_001973.1 + 25709 0.71 0.40263
Target:  5'- cGCCGaAGCCuUGC--GCGCC--GCCCGCg -3'
miRNA:   3'- -CGGC-UCGG-ACGucUGCGGcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 130617 0.71 0.40263
Target:  5'- aCCGAGCUcgGCGGACGCguaggauuuuaCGuGCCgGCa -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 134991 0.71 0.40263
Target:  5'- uCCGGGCCgucggGCGGGaGCCGGGCaCGUa -3'
miRNA:   3'- cGGCUCGGa----CGUCUgCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 89175 0.7 0.41085
Target:  5'- uCCuGGCaCUGCAGGCGCUGcgccGCCCGg -3'
miRNA:   3'- cGGcUCG-GACGUCUGCGGCu---CGGGCg -5'
7645 5' -62.1 NC_001973.1 + 151065 0.7 0.41085
Target:  5'- cUCGAGCUcgGCGGACGCguaggauccuaCGcGCCCGCc -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 107887 0.7 0.418336
Target:  5'- cGCCG-GCCguugGCcGACGCCGAacugagcGCCCa- -3'
miRNA:   3'- -CGGCuCGGa---CGuCUGCGGCU-------CGGGcg -5'
7645 5' -62.1 NC_001973.1 + 140380 0.7 0.419173
Target:  5'- cGCCGAGCg-GCuGGCuCuCGAGCCgCGCg -3'
miRNA:   3'- -CGGCUCGgaCGuCUGcG-GCUCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 6409 0.7 0.426751
Target:  5'- gGCCGAGUgcgCggcgGCGGcGCGCCGAcgagcgcGCCCGUc -3'
miRNA:   3'- -CGGCUCG---Ga---CGUC-UGCGGCU-------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 157892 0.7 0.427598
Target:  5'- uGUCGgaGGUC-GCGGcCGCCGcGCCCGCg -3'
miRNA:   3'- -CGGC--UCGGaCGUCuGCGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 48407 0.7 0.427598
Target:  5'- cGCUGAGCCUGCuccaAGACGCCcaAGCgaCGg -3'
miRNA:   3'- -CGGCUCGGACG----UCUGCGGc-UCGg-GCg -5'
7645 5' -62.1 NC_001973.1 + 48719 0.7 0.436122
Target:  5'- cGCuCGAGUCgUGCuuGCGCCGcuGCUCGCa -3'
miRNA:   3'- -CG-GCUCGG-ACGucUGCGGCu-CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 152378 0.7 0.436122
Target:  5'- aGCCGgacGGCCggcgcggGCGGGCGCgGGGCggCGCg -3'
miRNA:   3'- -CGGC---UCGGa------CGUCUGCGgCUCGg-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.