Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7649 | 5' | -56.3 | NC_001973.1 | + | 12145 | 0.66 | 0.870165 |
Target: 5'- cUGCCgGgGUCAaucgaguucGAGcCCGAUGAgAUCAUg -3' miRNA: 3'- -ACGGgC-CAGU---------CUC-GGCUACUgUAGUA- -5' |
|||||||
7649 | 5' | -56.3 | NC_001973.1 | + | 130830 | 0.66 | 0.877478 |
Target: 5'- aGCCCGaUgAGAucaugccuacCCGAUGACAUCAUg -3' miRNA: 3'- aCGGGCcAgUCUc---------GGCUACUGUAGUA- -5' |
|||||||
7649 | 5' | -56.3 | NC_001973.1 | + | 127463 | 0.66 | 0.88387 |
Target: 5'- gUGCCggcaagGGUCAaucGAGuucaaacCCGAUGACAUCAUg -3' miRNA: 3'- -ACGGg-----CCAGU---CUC-------GGCUACUGUAGUA- -5' |
|||||||
7649 | 5' | -56.3 | NC_001973.1 | + | 14616 | 0.66 | 0.884569 |
Target: 5'- cGCCCGGcugUCGGuGCgCGAcuACGUCAa -3' miRNA: 3'- aCGGGCC---AGUCuCG-GCUacUGUAGUa -5' |
|||||||
7649 | 5' | -56.3 | NC_001973.1 | + | 21017 | 0.66 | 0.898068 |
Target: 5'- aGCCCGau--GAGaucaugcuuguaCCGAUGACAUCAUg -3' miRNA: 3'- aCGGGCcaguCUC------------GGCUACUGUAGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home