miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 131769 0.71 0.820943
Target:  5'- aCAcgCGGUugacgACGGCGGCCgGCUCGgugaaggGGCc -3'
miRNA:   3'- -GUuaGCCG-----UGUUGCCGGaCGAGU-------UCG- -5'
7654 3' -53.1 NC_001973.1 + 17578 0.71 0.821819
Target:  5'- gAAUCGGCGCccgaguCGGCgUGCU--GGCa -3'
miRNA:   3'- gUUAGCCGUGuu----GCCGgACGAguUCG- -5'
7654 3' -53.1 NC_001973.1 + 124299 0.7 0.830477
Target:  5'- gCAAU-GGUACGucgGCGGCacgcGCUCGAGCg -3'
miRNA:   3'- -GUUAgCCGUGU---UGCCGga--CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 45366 0.7 0.830477
Target:  5'- -cGUCGuGCAgUAGCcGCCuUGCUCGAGCa -3'
miRNA:   3'- guUAGC-CGU-GUUGcCGG-ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 62587 0.7 0.838947
Target:  5'- ----gGGCGCAGCGacGCgUcGCUCGAGCg -3'
miRNA:   3'- guuagCCGUGUUGC--CGgA-CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 123993 0.7 0.838947
Target:  5'- ---aCGGCgACGucGCGGCCUGaccagUCGGGCg -3'
miRNA:   3'- guuaGCCG-UGU--UGCCGGACg----AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 112851 0.7 0.838947
Target:  5'- ---cCGcGCACAGC-GCCaGCUCGGGCu -3'
miRNA:   3'- guuaGC-CGUGUUGcCGGaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 59728 0.7 0.84722
Target:  5'- --uUCGGCugcugugcgACAACGGCCaccggGC-CGAGCu -3'
miRNA:   3'- guuAGCCG---------UGUUGCCGGa----CGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 87826 0.7 0.84722
Target:  5'- cCAGUCGaaGUGCAGCGGCCccuUG-UCGGGCg -3'
miRNA:   3'- -GUUAGC--CGUGUUGCCGG---ACgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 96043 0.7 0.855288
Target:  5'- --cUCgGGCugGGCGGUCUGUUCGcGUg -3'
miRNA:   3'- guuAG-CCGugUUGCCGGACGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 69550 0.7 0.855288
Target:  5'- gAGUCGaGCGCGACGuaGCCgucGCUC-GGCa -3'
miRNA:   3'- gUUAGC-CGUGUUGC--CGGa--CGAGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 16186 0.7 0.863145
Target:  5'- -uGUCGGCGCA--GGCC-GCUaGAGCg -3'
miRNA:   3'- guUAGCCGUGUugCCGGaCGAgUUCG- -5'
7654 3' -53.1 NC_001973.1 + 8100 0.7 0.870784
Target:  5'- ---aCGGCgaGCAcCGGCCgGCUCGuGCa -3'
miRNA:   3'- guuaGCCG--UGUuGCCGGaCGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 60378 0.7 0.870784
Target:  5'- uCAcgCGGCACAAUaGCUgcacGCUCGAGg -3'
miRNA:   3'- -GUuaGCCGUGUUGcCGGa---CGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 146069 0.7 0.870784
Target:  5'- ---gCGGCGC--CGaGCCgGCUCGGGCg -3'
miRNA:   3'- guuaGCCGUGuuGC-CGGaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 30491 0.69 0.878199
Target:  5'- gCAGUCgGGCACGACGGU--GCgcaGGGCg -3'
miRNA:   3'- -GUUAG-CCGUGUUGCCGgaCGag-UUCG- -5'
7654 3' -53.1 NC_001973.1 + 30395 0.69 0.878199
Target:  5'- ---cCGGCGCGGCGGCggcgGCggAGGCg -3'
miRNA:   3'- guuaGCCGUGUUGCCGga--CGagUUCG- -5'
7654 3' -53.1 NC_001973.1 + 55888 0.69 0.885384
Target:  5'- ---cCGGCgGCGGCaGGCUcggGCUCGGGCu -3'
miRNA:   3'- guuaGCCG-UGUUG-CCGGa--CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 7271 0.69 0.89165
Target:  5'- --cUCGGCGCGcgGCGcGCCcGCuaccgggUCAAGCa -3'
miRNA:   3'- guuAGCCGUGU--UGC-CGGaCG-------AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 139871 0.69 0.892334
Target:  5'- ---cUGGCACcacuugauCGGCaaGCUCGAGCg -3'
miRNA:   3'- guuaGCCGUGuu------GCCGgaCGAGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.