miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 146103 0.67 0.952563
Target:  5'- aGGUCGGgcCGCGGCGcugaGCCgGCUCGggAGCg -3'
miRNA:   3'- gUUAGCC--GUGUUGC----CGGaCGAGU--UCG- -5'
7654 3' -53.1 NC_001973.1 + 146069 0.7 0.870784
Target:  5'- ---gCGGCGC--CGaGCCgGCUCGGGCg -3'
miRNA:   3'- guuaGCCGUGuuGC-CGGaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 145551 1.12 0.00328
Target:  5'- aCAAUCGGCACAACGGCCUGCUCAAGCu -3'
miRNA:   3'- -GUUAGCCGUGUUGCCGGACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 141921 0.67 0.952563
Target:  5'- cCAAUCGaGCAgCGGCGGCaacaacagcaGCUCGccGGCg -3'
miRNA:   3'- -GUUAGC-CGU-GUUGCCGga--------CGAGU--UCG- -5'
7654 3' -53.1 NC_001973.1 + 139906 0.66 0.971417
Target:  5'- -uGUCGGUGCuGCGcGCCaUGCgcgccaugucucgcuUCGAGCa -3'
miRNA:   3'- guUAGCCGUGuUGC-CGG-ACG---------------AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 139871 0.69 0.892334
Target:  5'- ---cUGGCACcacuugauCGGCaaGCUCGAGCg -3'
miRNA:   3'- guuaGCCGUGuu------GCCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 138577 0.66 0.969944
Target:  5'- --uUCGGC-CAGCGcGCCcuccggaUGCUugaCGAGCa -3'
miRNA:   3'- guuAGCCGuGUUGC-CGG-------ACGA---GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 136908 0.66 0.967158
Target:  5'- --cUUGGCGCAgcACGGCUUGCauaUCAGu- -3'
miRNA:   3'- guuAGCCGUGU--UGCCGGACG---AGUUcg -5'
7654 3' -53.1 NC_001973.1 + 133452 0.66 0.967158
Target:  5'- aAGUCGGCGCGcgggucgcgcACGgagcGCCaGCgggCGAGCa -3'
miRNA:   3'- gUUAGCCGUGU----------UGC----CGGaCGa--GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 132543 0.82 0.281694
Target:  5'- ----gGGCGCGGCGGCggGCUCGAGCg -3'
miRNA:   3'- guuagCCGUGUUGCCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 132454 0.66 0.963853
Target:  5'- ---cCGGCGgGgcGCGGCCUcgUCGGGCu -3'
miRNA:   3'- guuaGCCGUgU--UGCCGGAcgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 131769 0.71 0.820943
Target:  5'- aCAcgCGGUugacgACGGCGGCCgGCUCGgugaaggGGCc -3'
miRNA:   3'- -GUuaGCCG-----UGUUGCCGGaCGAGU-------UCG- -5'
7654 3' -53.1 NC_001973.1 + 128122 0.68 0.917714
Target:  5'- cCGAgCGaGCAC-ACGGCCagGCUguGGCa -3'
miRNA:   3'- -GUUaGC-CGUGuUGCCGGa-CGAguUCG- -5'
7654 3' -53.1 NC_001973.1 + 126280 0.79 0.380629
Target:  5'- gCGAUCuGGCGCu-CGGUCaUGCUCGAGCg -3'
miRNA:   3'- -GUUAG-CCGUGuuGCCGG-ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 124718 0.68 0.928916
Target:  5'- ---aCGGCAgGuucuACGGCCUGgaccgCGAGCg -3'
miRNA:   3'- guuaGCCGUgU----UGCCGGACga---GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 124299 0.7 0.830477
Target:  5'- gCAAU-GGUACGucgGCGGCacgcGCUCGAGCg -3'
miRNA:   3'- -GUUAgCCGUGU---UGCCGga--CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 123993 0.7 0.838947
Target:  5'- ---aCGGCgACGucGCGGCCUGaccagUCGGGCg -3'
miRNA:   3'- guuaGCCG-UGU--UGCCGGACg----AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 123371 0.66 0.973115
Target:  5'- gGAUCGcacgccgcGCGCAACGcGCC-GUucgUCAAGCg -3'
miRNA:   3'- gUUAGC--------CGUGUUGC-CGGaCG---AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 120948 0.73 0.716674
Target:  5'- gCGGUCuGCACGGCGGCCaGCgc-GGCg -3'
miRNA:   3'- -GUUAGcCGUGUUGCCGGaCGaguUCG- -5'
7654 3' -53.1 NC_001973.1 + 119265 0.68 0.911738
Target:  5'- -----aGCGCAGCGGCCUGUacgaCGAGUu -3'
miRNA:   3'- guuagcCGUGUUGCCGGACGa---GUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.