miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 5' -58.7 NC_001973.1 + 22731 0.66 0.831549
Target:  5'- cUGgGCGAGcCGCGGCCGU--AUCUGu -3'
miRNA:   3'- cAUgUGCUC-GCGCCGGCAccUGGACu -5'
7654 5' -58.7 NC_001973.1 + 135892 0.66 0.823302
Target:  5'- -gACA-GAGCgGCGGUCGcGGGCCgGAc -3'
miRNA:   3'- caUGUgCUCG-CGCCGGCaCCUGGaCU- -5'
7654 5' -58.7 NC_001973.1 + 4971 0.66 0.806317
Target:  5'- ---gGCGAGC-CGGUCGUGcGACCg-- -3'
miRNA:   3'- caugUGCUCGcGCCGGCAC-CUGGacu -5'
7654 5' -58.7 NC_001973.1 + 140777 0.66 0.806317
Target:  5'- uGUACAgCGAGCGCGaGuUCGUGagcaacgacGACCUGu -3'
miRNA:   3'- -CAUGU-GCUCGCGC-C-GGCAC---------CUGGACu -5'
7654 5' -58.7 NC_001973.1 + 46013 0.66 0.806317
Target:  5'- -cGCGCGAGCGCcugucuGGCCaUGGGCg--- -3'
miRNA:   3'- caUGUGCUCGCG------CCGGcACCUGgacu -5'
7654 5' -58.7 NC_001973.1 + 91425 0.66 0.806317
Target:  5'- cGUACAUGAcGUGCGGCCucuccGcCCUGAa -3'
miRNA:   3'- -CAUGUGCU-CGCGCCGGcac--CuGGACU- -5'
7654 5' -58.7 NC_001973.1 + 94108 0.66 0.806317
Target:  5'- aUACACGc-CGUGGCCGaGGACauuCUGAa -3'
miRNA:   3'- cAUGUGCucGCGCCGGCaCCUG---GACU- -5'
7654 5' -58.7 NC_001973.1 + 72822 0.66 0.787835
Target:  5'- uGUugACGAGgccgGCGGCCGccgcgcaguccgaUGGACCg-- -3'
miRNA:   3'- -CAugUGCUCg---CGCCGGC-------------ACCUGGacu -5'
7654 5' -58.7 NC_001973.1 + 5946 0.67 0.779728
Target:  5'- aUGCGCGA-CGCGGCCGgcGGAugcgacguCCUGc -3'
miRNA:   3'- cAUGUGCUcGCGCCGGCa-CCU--------GGACu -5'
7654 5' -58.7 NC_001973.1 + 5982 0.67 0.779728
Target:  5'- uUGCACGcGGCGCGGUCGcguuucGACCgGAc -3'
miRNA:   3'- cAUGUGC-UCGCGCCGGCac----CUGGaCU- -5'
7654 5' -58.7 NC_001973.1 + 21546 0.67 0.770602
Target:  5'- -gGCGuCGGGCGC-GCCGUGGuCCcGGc -3'
miRNA:   3'- caUGU-GCUCGCGcCGGCACCuGGaCU- -5'
7654 5' -58.7 NC_001973.1 + 51729 0.67 0.732999
Target:  5'- -cACACGcGCGagGGCaCGUGGGCCg-- -3'
miRNA:   3'- caUGUGCuCGCg-CCG-GCACCUGGacu -5'
7654 5' -58.7 NC_001973.1 + 132539 0.68 0.713663
Target:  5'- -cGC-CGGGCGCGGCgGcGGGCUcGAg -3'
miRNA:   3'- caUGuGCUCGCGCCGgCaCCUGGaCU- -5'
7654 5' -58.7 NC_001973.1 + 95828 0.68 0.68418
Target:  5'- cGUuCACGGGCGCGGCgacGGGCCcGGu -3'
miRNA:   3'- -CAuGUGCUCGCGCCGgcaCCUGGaCU- -5'
7654 5' -58.7 NC_001973.1 + 36310 0.68 0.68418
Target:  5'- -aACACGGGCgccgcggccgacGCGGCCGacgcGGGCCUc- -3'
miRNA:   3'- caUGUGCUCG------------CGCCGGCa---CCUGGAcu -5'
7654 5' -58.7 NC_001973.1 + 95782 0.69 0.654326
Target:  5'- --gUACGGGCGCGGC--UGGACCg-- -3'
miRNA:   3'- cauGUGCUCGCGCCGgcACCUGGacu -5'
7654 5' -58.7 NC_001973.1 + 110863 0.69 0.654326
Target:  5'- uGUACGCGuGC-CGGCgCGcGGACCUcGAc -3'
miRNA:   3'- -CAUGUGCuCGcGCCG-GCaCCUGGA-CU- -5'
7654 5' -58.7 NC_001973.1 + 53873 0.69 0.654326
Target:  5'- -cGC-CGAGCgcgGCGGCCGUGG-CCg-- -3'
miRNA:   3'- caUGuGCUCG---CGCCGGCACCuGGacu -5'
7654 5' -58.7 NC_001973.1 + 95131 0.7 0.598347
Target:  5'- gGUGCACGAcccguGgGCGGCCGUgcagaagccgcaaaaGGGCgUGAc -3'
miRNA:   3'- -CAUGUGCU-----CgCGCCGGCA---------------CCUGgACU- -5'
7654 5' -58.7 NC_001973.1 + 7929 0.7 0.584421
Target:  5'- -aGCGCGuguGCGCGGCCGgcgUGGugCa-- -3'
miRNA:   3'- caUGUGCu--CGCGCCGGC---ACCugGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.