Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7656 | 5' | -54.2 | NC_001973.1 | + | 74481 | 0.68 | 0.900234 |
Target: 5'- cAGCGCCcGCUCG--ACGCGUCGAa- -3' miRNA: 3'- cUCGCGGcUGAGCcuUGUGCAGUUcu -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 113898 | 0.68 | 0.900234 |
Target: 5'- ---aGCCGGCUCGcGAGCACGgcacgCAaaGGAa -3' miRNA: 3'- cucgCGGCUGAGC-CUUGUGCa----GU--UCU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 66389 | 0.68 | 0.906546 |
Target: 5'- cAGCGCCGACUCGaccaaGAGCAacgcCGUCu--- -3' miRNA: 3'- cUCGCGGCUGAGC-----CUUGU----GCAGuucu -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 137712 | 0.68 | 0.918456 |
Target: 5'- uGGGCGCCGAUguggcuuucauuUCGGAGCAgG-CGAu- -3' miRNA: 3'- -CUCGCGGCUG------------AGCCUUGUgCaGUUcu -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 106320 | 0.68 | 0.918456 |
Target: 5'- --aCGuCCGACUCGGAcgACGUCGcAGAc -3' miRNA: 3'- cucGC-GGCUGAGCCUugUGCAGU-UCU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 117448 | 0.67 | 0.924051 |
Target: 5'- -cGuCGuuGGCUCGGAACACG-CAc-- -3' miRNA: 3'- cuC-GCggCUGAGCCUUGUGCaGUucu -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 144452 | 0.67 | 0.929404 |
Target: 5'- -cGCGCgCGugUCGGGcgGCGUgCGGGAc -3' miRNA: 3'- cuCGCG-GCugAGCCUugUGCA-GUUCU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 86116 | 0.67 | 0.929404 |
Target: 5'- uGGCGCUuucucaACUCGGAcCGCGUgGAGGu -3' miRNA: 3'- cUCGCGGc-----UGAGCCUuGUGCAgUUCU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 45601 | 0.67 | 0.929404 |
Target: 5'- -cGuCGCCGg--CGGAGCGCGUCGGcGAu -3' miRNA: 3'- cuC-GCGGCugaGCCUUGUGCAGUU-CU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 97116 | 0.67 | 0.934516 |
Target: 5'- uGGCG-CGACcUGGAGUugGUCGAGAa -3' miRNA: 3'- cUCGCgGCUGaGCCUUGugCAGUUCU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 130725 | 0.67 | 0.934516 |
Target: 5'- -cGCGUCGGC-CGGGGCAaucgaGuUCAAGAc -3' miRNA: 3'- cuCGCGGCUGaGCCUUGUg----C-AGUUCU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 153356 | 0.67 | 0.944018 |
Target: 5'- aGAGCGaggucgauuUCGACUCGG-ACGgGUCGgAGAa -3' miRNA: 3'- -CUCGC---------GGCUGAGCCuUGUgCAGU-UCU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 131784 | 0.66 | 0.952571 |
Target: 5'- cGGCgGCCGGCUCGGugaaggGGC-CGUCGAc- -3' miRNA: 3'- cUCG-CGGCUGAGCC------UUGuGCAGUUcu -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 146107 | 0.66 | 0.952571 |
Target: 5'- cGGGCcgcggcgcugaGCCGGCUCGGgAGCGgGcCGGGGu -3' miRNA: 3'- -CUCG-----------CGGCUGAGCC-UUGUgCaGUUCU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 23084 | 0.66 | 0.952571 |
Target: 5'- uGGCGCUGcGCUCGGccgaagAGCGCGcCGAGc -3' miRNA: 3'- cUCGCGGC-UGAGCC------UUGUGCaGUUCu -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 96755 | 0.66 | 0.952571 |
Target: 5'- gGAGCGCCGGCgagUCGGGcgGCGUgGcGGc -3' miRNA: 3'- -CUCGCGGCUG---AGCCUugUGCAgUuCU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 66959 | 0.66 | 0.956499 |
Target: 5'- -uGCGCCGACUUcaaGaAGCGCuUCAGGAa -3' miRNA: 3'- cuCGCGGCUGAG---CcUUGUGcAGUUCU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 69146 | 0.66 | 0.956499 |
Target: 5'- cGAGCGCaUGACUUGGGA-GCGUUAc-- -3' miRNA: 3'- -CUCGCG-GCUGAGCCUUgUGCAGUucu -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 101504 | 0.66 | 0.960199 |
Target: 5'- cGAGU-CCGACUC-GAugACGUcCGAGAc -3' miRNA: 3'- -CUCGcGGCUGAGcCUugUGCA-GUUCU- -5' |
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7656 | 5' | -54.2 | NC_001973.1 | + | 145399 | 0.66 | 0.960199 |
Target: 5'- gGAGCGCCuGAC-----GCugGUCAAGAa -3' miRNA: 3'- -CUCGCGG-CUGagccuUGugCAGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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