miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7657 3' -68.4 NC_001973.1 + 159239 0.68 0.305315
Target:  5'- cCCGuuGuuGUCGCCGCCcuaccaaCUGACCGc -3'
miRNA:   3'- cGGCggCggCGGCGGCGGc------GGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 158929 0.68 0.318387
Target:  5'- cGCCGCgCGCgaccgaGCCGCCcgcguCCGC-GACCAa -3'
miRNA:   3'- -CGGCG-GCGg-----CGGCGGc----GGCGgCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 158746 0.67 0.352885
Target:  5'- aGCUgaaGCCGgCGaCCGagCGCgCGCCGACCu -3'
miRNA:   3'- -CGG---CGGCgGC-GGCg-GCG-GCGGCUGGu -5'
7657 3' -68.4 NC_001973.1 + 158613 0.81 0.039131
Target:  5'- uCCGCCuCCGCCGuuGCCGCCGcCCGg -3'
miRNA:   3'- cGGCGGcGGCGGCggCGGCGGCuGGU- -5'
7657 3' -68.4 NC_001973.1 + 158531 0.79 0.052712
Target:  5'- cGCCGCCGCCaCCGCCuccuccgccuccGCCGCC-ACCAc -3'
miRNA:   3'- -CGGCGGCGGcGGCGG------------CGGCGGcUGGU- -5'
7657 3' -68.4 NC_001973.1 + 158034 0.69 0.244513
Target:  5'- cGCCGCCGCCGCgC-CCGUgcguagcgacgacuCGCCGAg-- -3'
miRNA:   3'- -CGGCGGCGGCG-GcGGCG--------------GCGGCUggu -5'
7657 3' -68.4 NC_001973.1 + 157880 0.68 0.298935
Target:  5'- cGCUGCgGCUcgugucggagGUCGCgGCCGCCGcGCCc -3'
miRNA:   3'- -CGGCGgCGG----------CGGCGgCGGCGGC-UGGu -5'
7657 3' -68.4 NC_001973.1 + 156098 0.84 0.020924
Target:  5'- aGCCGCaGCCGCCGCCGCCGCCauuuCCu -3'
miRNA:   3'- -CGGCGgCGGCGGCGGCGGCGGcu--GGu -5'
7657 3' -68.4 NC_001973.1 + 155107 0.69 0.26282
Target:  5'- aGCCGCCGUCGCUucuaucacgGgCGgCGuCCGGCCu -3'
miRNA:   3'- -CGGCGGCGGCGG---------CgGCgGC-GGCUGGu -5'
7657 3' -68.4 NC_001973.1 + 151773 0.66 0.397658
Target:  5'- gGCCGCCGCCcaaaGCUuggacaugGUCGUgcCCGACCAg -3'
miRNA:   3'- -CGGCGGCGG----CGG--------CGGCGgcGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 147828 0.74 0.114968
Target:  5'- aCUGCCGCCGCCGCCGCuuCGagagCGuCCAg -3'
miRNA:   3'- cGGCGGCGGCGGCGGCG--GCg---GCuGGU- -5'
7657 3' -68.4 NC_001973.1 + 144370 1.08 0.000319
Target:  5'- aGCCGCCGCCGCCGCCGCCGCCGACCAu -3'
miRNA:   3'- -CGGCGGCGGCGGCGGCGGCGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 140371 0.72 0.175501
Target:  5'- cGUCGUCGCCGCCGa-GCgGCUGGCUc -3'
miRNA:   3'- -CGGCGGCGGCGGCggCGgCGGCUGGu -5'
7657 3' -68.4 NC_001973.1 + 139822 0.66 0.385366
Target:  5'- aGCCGCCGuuGCgauucacggacgacgCGCaccuGuCCGCgGACCGg -3'
miRNA:   3'- -CGGCGGCggCG---------------GCGg---C-GGCGgCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 139628 0.66 0.405466
Target:  5'- uGUCGUugauggagaacgCGCaGCCGgacCCGaCCGCCGGCCAg -3'
miRNA:   3'- -CGGCG------------GCGgCGGC---GGC-GGCGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 138991 0.71 0.179586
Target:  5'- uCCGCCGCCG-CGuCCGacuCCGCCGgcGCCAg -3'
miRNA:   3'- cGGCGGCGGCgGC-GGC---GGCGGC--UGGU- -5'
7657 3' -68.4 NC_001973.1 + 137829 0.67 0.367406
Target:  5'- gGUCGUCGCgCGgCGCCGCCaucaGCgGGCgCAg -3'
miRNA:   3'- -CGGCGGCG-GCgGCGGCGG----CGgCUG-GU- -5'
7657 3' -68.4 NC_001973.1 + 133908 0.74 0.12646
Target:  5'- cGCCcUCGCgCGUCGCCGCCGCCcuguCCAg -3'
miRNA:   3'- -CGGcGGCG-GCGGCGGCGGCGGcu--GGU- -5'
7657 3' -68.4 NC_001973.1 + 133310 0.7 0.236024
Target:  5'- cGCCGUCGCgcggcgaaacuucaaGUCGCgCGCgaCGCCGACCGu -3'
miRNA:   3'- -CGGCGGCGg--------------CGGCG-GCG--GCGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 133280 0.71 0.179586
Target:  5'- gGCCGCgGCCGagaaCGCgGCCGgCGGCg- -3'
miRNA:   3'- -CGGCGgCGGCg---GCGgCGGCgGCUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.