miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7657 5' -51.1 NC_001973.1 + 46408 0.66 0.995321
Target:  5'- gCGCGACGacGACGACUcgGACGCgaCCAGc -3'
miRNA:   3'- -GCGCUGUc-UUGCUGAagUUGUG--GGUC- -5'
7657 5' -51.1 NC_001973.1 + 95863 0.66 0.994561
Target:  5'- aCGUGGgAGGACGGCguggUCGACuACCgCGa -3'
miRNA:   3'- -GCGCUgUCUUGCUGa---AGUUG-UGG-GUc -5'
7657 5' -51.1 NC_001973.1 + 95033 0.66 0.994561
Target:  5'- uGCGGCgGGGACGGCaUCAACGa-CAGc -3'
miRNA:   3'- gCGCUG-UCUUGCUGaAGUUGUggGUC- -5'
7657 5' -51.1 NC_001973.1 + 8797 0.66 0.992739
Target:  5'- aCGCGACGGAacccGCGGCgcgaagacaCGACgaGCCCGc -3'
miRNA:   3'- -GCGCUGUCU----UGCUGaa-------GUUG--UGGGUc -5'
7657 5' -51.1 NC_001973.1 + 138454 0.66 0.992739
Target:  5'- gCGCGuCAGAu--GCUccCGACACCCGGc -3'
miRNA:   3'- -GCGCuGUCUugcUGAa-GUUGUGGGUC- -5'
7657 5' -51.1 NC_001973.1 + 79986 0.66 0.992739
Target:  5'- uGCcgGGCAGAAag---UCGACGCCCGGg -3'
miRNA:   3'- gCG--CUGUCUUgcugaAGUUGUGGGUC- -5'
7657 5' -51.1 NC_001973.1 + 13370 0.66 0.991662
Target:  5'- gCGCGACGGAACaACaUUUAugGCCa-- -3'
miRNA:   3'- -GCGCUGUCUUGcUG-AAGUugUGGguc -5'
7657 5' -51.1 NC_001973.1 + 5900 0.66 0.991662
Target:  5'- gCGCGACGcGAACGAgaUCcucgcguCGCCCGc -3'
miRNA:   3'- -GCGCUGU-CUUGCUgaAGuu-----GUGGGUc -5'
7657 5' -51.1 NC_001973.1 + 109807 0.66 0.991662
Target:  5'- uGCGuGCucGugGugUUCGGCACCCGa -3'
miRNA:   3'- gCGC-UGucUugCugAAGUUGUGGGUc -5'
7657 5' -51.1 NC_001973.1 + 131780 0.66 0.991315
Target:  5'- aCGaCGGCGGc-CGGCUcggugaaggggccgUCGACGCCCAa -3'
miRNA:   3'- -GC-GCUGUCuuGCUGA--------------AGUUGUGGGUc -5'
7657 5' -51.1 NC_001973.1 + 48432 0.67 0.990462
Target:  5'- aGCGACGGu-CGugUUCAAUuccgcuCCCGu -3'
miRNA:   3'- gCGCUGUCuuGCugAAGUUGu-----GGGUc -5'
7657 5' -51.1 NC_001973.1 + 52189 0.67 0.990462
Target:  5'- gCGCGGCGGGgucgcGCGACUcgagCAGCgACUCGa -3'
miRNA:   3'- -GCGCUGUCU-----UGCUGAa---GUUG-UGGGUc -5'
7657 5' -51.1 NC_001973.1 + 94794 0.67 0.990462
Target:  5'- uGCaACGcGGACGGCUgucggUCAGCGCCCc- -3'
miRNA:   3'- gCGcUGU-CUUGCUGA-----AGUUGUGGGuc -5'
7657 5' -51.1 NC_001973.1 + 109625 0.67 0.990462
Target:  5'- -aUGACGGAcguggugcGCGACUUCGACGCgCu- -3'
miRNA:   3'- gcGCUGUCU--------UGCUGAAGUUGUGgGuc -5'
7657 5' -51.1 NC_001973.1 + 73775 0.67 0.990335
Target:  5'- aCGCGGCGGGgaacucgaGCGAgUUCGccaggcucucgacGCGCUCGGu -3'
miRNA:   3'- -GCGCUGUCU--------UGCUgAAGU-------------UGUGGGUC- -5'
7657 5' -51.1 NC_001973.1 + 124127 0.67 0.98913
Target:  5'- uCGCG-CGcGAACGGCUggAGCACCUg- -3'
miRNA:   3'- -GCGCuGU-CUUGCUGAagUUGUGGGuc -5'
7657 5' -51.1 NC_001973.1 + 59834 0.67 0.98913
Target:  5'- gCGCGACA--ACGccgcGCUggcCAGCGCCCAc -3'
miRNA:   3'- -GCGCUGUcuUGC----UGAa--GUUGUGGGUc -5'
7657 5' -51.1 NC_001973.1 + 132494 0.67 0.987658
Target:  5'- aCGCGAcCAGccCGGC--CAACGCCCAc -3'
miRNA:   3'- -GCGCU-GUCuuGCUGaaGUUGUGGGUc -5'
7657 5' -51.1 NC_001973.1 + 40122 0.67 0.987658
Target:  5'- aGCGGgGGuGGCGAC-UCGucGCGCCCAu -3'
miRNA:   3'- gCGCUgUC-UUGCUGaAGU--UGUGGGUc -5'
7657 5' -51.1 NC_001973.1 + 30398 0.67 0.987658
Target:  5'- gCGCGGCGGcGGCGGCggaGGCGCCgCGa -3'
miRNA:   3'- -GCGCUGUC-UUGCUGaagUUGUGG-GUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.