Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7657 | 5' | -51.1 | NC_001973.1 | + | 46408 | 0.66 | 0.995321 |
Target: 5'- gCGCGACGacGACGACUcgGACGCgaCCAGc -3' miRNA: 3'- -GCGCUGUc-UUGCUGAagUUGUG--GGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 95863 | 0.66 | 0.994561 |
Target: 5'- aCGUGGgAGGACGGCguggUCGACuACCgCGa -3' miRNA: 3'- -GCGCUgUCUUGCUGa---AGUUG-UGG-GUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 95033 | 0.66 | 0.994561 |
Target: 5'- uGCGGCgGGGACGGCaUCAACGa-CAGc -3' miRNA: 3'- gCGCUG-UCUUGCUGaAGUUGUggGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 8797 | 0.66 | 0.992739 |
Target: 5'- aCGCGACGGAacccGCGGCgcgaagacaCGACgaGCCCGc -3' miRNA: 3'- -GCGCUGUCU----UGCUGaa-------GUUG--UGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 138454 | 0.66 | 0.992739 |
Target: 5'- gCGCGuCAGAu--GCUccCGACACCCGGc -3' miRNA: 3'- -GCGCuGUCUugcUGAa-GUUGUGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 79986 | 0.66 | 0.992739 |
Target: 5'- uGCcgGGCAGAAag---UCGACGCCCGGg -3' miRNA: 3'- gCG--CUGUCUUgcugaAGUUGUGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 13370 | 0.66 | 0.991662 |
Target: 5'- gCGCGACGGAACaACaUUUAugGCCa-- -3' miRNA: 3'- -GCGCUGUCUUGcUG-AAGUugUGGguc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 5900 | 0.66 | 0.991662 |
Target: 5'- gCGCGACGcGAACGAgaUCcucgcguCGCCCGc -3' miRNA: 3'- -GCGCUGU-CUUGCUgaAGuu-----GUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 109807 | 0.66 | 0.991662 |
Target: 5'- uGCGuGCucGugGugUUCGGCACCCGa -3' miRNA: 3'- gCGC-UGucUugCugAAGUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 131780 | 0.66 | 0.991315 |
Target: 5'- aCGaCGGCGGc-CGGCUcggugaaggggccgUCGACGCCCAa -3' miRNA: 3'- -GC-GCUGUCuuGCUGA--------------AGUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 48432 | 0.67 | 0.990462 |
Target: 5'- aGCGACGGu-CGugUUCAAUuccgcuCCCGu -3' miRNA: 3'- gCGCUGUCuuGCugAAGUUGu-----GGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 52189 | 0.67 | 0.990462 |
Target: 5'- gCGCGGCGGGgucgcGCGACUcgagCAGCgACUCGa -3' miRNA: 3'- -GCGCUGUCU-----UGCUGAa---GUUG-UGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 94794 | 0.67 | 0.990462 |
Target: 5'- uGCaACGcGGACGGCUgucggUCAGCGCCCc- -3' miRNA: 3'- gCGcUGU-CUUGCUGA-----AGUUGUGGGuc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 109625 | 0.67 | 0.990462 |
Target: 5'- -aUGACGGAcguggugcGCGACUUCGACGCgCu- -3' miRNA: 3'- gcGCUGUCU--------UGCUGAAGUUGUGgGuc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 73775 | 0.67 | 0.990335 |
Target: 5'- aCGCGGCGGGgaacucgaGCGAgUUCGccaggcucucgacGCGCUCGGu -3' miRNA: 3'- -GCGCUGUCU--------UGCUgAAGU-------------UGUGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 124127 | 0.67 | 0.98913 |
Target: 5'- uCGCG-CGcGAACGGCUggAGCACCUg- -3' miRNA: 3'- -GCGCuGU-CUUGCUGAagUUGUGGGuc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 59834 | 0.67 | 0.98913 |
Target: 5'- gCGCGACA--ACGccgcGCUggcCAGCGCCCAc -3' miRNA: 3'- -GCGCUGUcuUGC----UGAa--GUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 132494 | 0.67 | 0.987658 |
Target: 5'- aCGCGAcCAGccCGGC--CAACGCCCAc -3' miRNA: 3'- -GCGCU-GUCuuGCUGaaGUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 40122 | 0.67 | 0.987658 |
Target: 5'- aGCGGgGGuGGCGAC-UCGucGCGCCCAu -3' miRNA: 3'- gCGCUgUC-UUGCUGaAGU--UGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 30398 | 0.67 | 0.987658 |
Target: 5'- gCGCGGCGGcGGCGGCggaGGCGCCgCGa -3' miRNA: 3'- -GCGCUGUC-UUGCUGaagUUGUGG-GUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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