Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7659 | 3' | -52.7 | NC_001973.1 | + | 84360 | 0.66 | 0.978602 |
Target: 5'- -cGAGCGCGUgaaagccgACCUGucGCGGCUc-- -3' miRNA: 3'- gaCUUGUGCG--------UGGACuuCGUCGAcac -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 96096 | 0.66 | 0.975885 |
Target: 5'- gCUGAacgccauGCACGCcgGCCUGAAGcCGGCc--- -3' miRNA: 3'- -GACU-------UGUGCG--UGGACUUC-GUCGacac -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 35823 | 0.66 | 0.97061 |
Target: 5'- -cGuACACGCucaUGggGCcGCUGUGg -3' miRNA: 3'- gaCuUGUGCGuggACuuCGuCGACAC- -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 139844 | 0.66 | 0.967523 |
Target: 5'- --cGACGCGCACCUGuccGCGGaccgGUGc -3' miRNA: 3'- gacUUGUGCGUGGACuu-CGUCga--CAC- -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 54963 | 0.66 | 0.967202 |
Target: 5'- -cGGGCACGCcgaugagGCCgGAGGCGGCg--- -3' miRNA: 3'- gaCUUGUGCG-------UGGaCUUCGUCGacac -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 136364 | 0.67 | 0.956903 |
Target: 5'- aUGAAgcCGCAUCUGGAGCAGUa--- -3' miRNA: 3'- gACUUguGCGUGGACUUCGUCGacac -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 37739 | 0.67 | 0.95289 |
Target: 5'- uUGAcCACGCugcucGCCUGGcGGCGGCaGUGu -3' miRNA: 3'- gACUuGUGCG-----UGGACU-UCGUCGaCAC- -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 58630 | 0.67 | 0.944129 |
Target: 5'- cCUGAAgACGCGCUUcGAcgccGGCGGC-GUGu -3' miRNA: 3'- -GACUUgUGCGUGGA-CU----UCGUCGaCAC- -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 146666 | 0.67 | 0.944129 |
Target: 5'- uUGAGCGCGCucacgagguCCUGGAcCAGC-GUGg -3' miRNA: 3'- gACUUGUGCGu--------GGACUUcGUCGaCAC- -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 115655 | 0.67 | 0.943665 |
Target: 5'- gUGGACAgcCGCGgCUGGgccgacgAGCAGCUGg- -3' miRNA: 3'- gACUUGU--GCGUgGACU-------UCGUCGACac -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 140366 | 0.68 | 0.934367 |
Target: 5'- aUGAGCGuCGuCGCCgccGAGCGGCUGg- -3' miRNA: 3'- gACUUGU-GC-GUGGac-UUCGUCGACac -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 133568 | 0.69 | 0.89899 |
Target: 5'- gCUGAACACGUugUUGGcgAGCAGUUu-- -3' miRNA: 3'- -GACUUGUGCGugGACU--UCGUCGAcac -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 23214 | 0.69 | 0.89899 |
Target: 5'- -cGAGCGCGCaguggcgcaggGCCUGgcGCuGCUGa- -3' miRNA: 3'- gaCUUGUGCG-----------UGGACuuCGuCGACac -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 107910 | 0.69 | 0.892216 |
Target: 5'- aCUGAGCGCcCACCguucGAAGCAGgCgacGUGg -3' miRNA: 3'- -GACUUGUGcGUGGa---CUUCGUC-Ga--CAC- -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 59706 | 0.69 | 0.885199 |
Target: 5'- aUGGACGuuugguUGCGCCUGuuucGGCuGCUGUGc -3' miRNA: 3'- gACUUGU------GCGUGGACu---UCGuCGACAC- -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 115399 | 0.69 | 0.885199 |
Target: 5'- gCUGAGCGCGCACgauucGCGGCUGc- -3' miRNA: 3'- -GACUUGUGCGUGgacuuCGUCGACac -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 28930 | 0.7 | 0.877944 |
Target: 5'- uUGGgcuuGCACGCGgCUGggGCGGCa--- -3' miRNA: 3'- gACU----UGUGCGUgGACuuCGUCGacac -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 144448 | 0.7 | 0.870455 |
Target: 5'- -aGGACGCGCGCgUGucgGGCGGC-GUGc -3' miRNA: 3'- gaCUUGUGCGUGgACu--UCGUCGaCAC- -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 139036 | 0.7 | 0.862738 |
Target: 5'- aUGAACGCGCuGCCgcgGAAGuCGGCgaaGUGc -3' miRNA: 3'- gACUUGUGCG-UGGa--CUUC-GUCGa--CAC- -5' |
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7659 | 3' | -52.7 | NC_001973.1 | + | 1825 | 0.7 | 0.846646 |
Target: 5'- -cGAGCGCGCACac--GGCcaGGCUGUGg -3' miRNA: 3'- gaCUUGUGCGUGgacuUCG--UCGACAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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