miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7661 5' -58.2 NC_001973.1 + 81094 0.74 0.43006
Target:  5'- -uUCGcGCUGGGCGCgGGCUCGuugaagGCGCg -3'
miRNA:   3'- cuGGCuCGACUUGCGgCCGAGC------UGCG- -5'
7661 5' -58.2 NC_001973.1 + 21573 0.73 0.438809
Target:  5'- cGCgGGGUUGAAgugcuCGCCGGC-CGACGUg -3'
miRNA:   3'- cUGgCUCGACUU-----GCGGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 44475 0.73 0.44766
Target:  5'- --aCGGGCgcucGGGCGCgGGCaUCGGCGCg -3'
miRNA:   3'- cugGCUCGa---CUUGCGgCCG-AGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 71776 0.73 0.456608
Target:  5'- cGCCGAGCUcGAgGCCGGC--GGCGCc -3'
miRNA:   3'- cUGGCUCGAcUUgCGGCCGagCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 158758 0.73 0.465652
Target:  5'- cGACCGAGCgc-GCGCCGaccuacacGCcCGACGCc -3'
miRNA:   3'- -CUGGCUCGacuUGCGGC--------CGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 51847 0.73 0.465652
Target:  5'- uGugCGAGCUGGGCGCCG--UCGA-GCa -3'
miRNA:   3'- -CugGCUCGACUUGCGGCcgAGCUgCG- -5'
7661 5' -58.2 NC_001973.1 + 46115 0.73 0.484013
Target:  5'- -cCCGcGCUGGACGCgCGGCU--GCGCa -3'
miRNA:   3'- cuGGCuCGACUUGCG-GCCGAgcUGCG- -5'
7661 5' -58.2 NC_001973.1 + 61086 0.72 0.502713
Target:  5'- aGACCGGGCaGGcCGCgCGGC-CGACGg -3'
miRNA:   3'- -CUGGCUCGaCUuGCG-GCCGaGCUGCg -5'
7661 5' -58.2 NC_001973.1 + 7730 0.72 0.502713
Target:  5'- cGACUGAcGCUgGAGCaCCGGUgCGGCGCg -3'
miRNA:   3'- -CUGGCU-CGA-CUUGcGGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 132539 0.72 0.512181
Target:  5'- cGCCGGGCgcGGCgGCgGGCUCGAgCGCg -3'
miRNA:   3'- cUGGCUCGacUUG-CGgCCGAGCU-GCG- -5'
7661 5' -58.2 NC_001973.1 + 951 0.72 0.512181
Target:  5'- aGACUGAGCUuccGGCGCgGacGCUCGACGUc -3'
miRNA:   3'- -CUGGCUCGAc--UUGCGgC--CGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 34957 0.72 0.512181
Target:  5'- cGCCGAGCUGAACGC--GCUCacgGACGa -3'
miRNA:   3'- cUGGCUCGACUUGCGgcCGAG---CUGCg -5'
7661 5' -58.2 NC_001973.1 + 105894 0.72 0.521722
Target:  5'- cGCCGAGCUGGcgcuCGCCcGCcucgUCGAUGCc -3'
miRNA:   3'- cUGGCUCGACUu---GCGGcCG----AGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 132436 0.72 0.521722
Target:  5'- --gCGAGCgUGGuggagGCGCCGGCggGGCGCg -3'
miRNA:   3'- cugGCUCG-ACU-----UGCGGCCGagCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 15996 0.72 0.531331
Target:  5'- aACUGAGCgcgccgGAcgaccgaugGCGCCaGCUCGGCGUa -3'
miRNA:   3'- cUGGCUCGa-----CU---------UGCGGcCGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 133285 0.71 0.541004
Target:  5'- cGGCCGAGaac-GCgGCCGGCggCGGCGCc -3'
miRNA:   3'- -CUGGCUCgacuUG-CGGCCGa-GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 109364 0.71 0.541004
Target:  5'- cGGCCGuAGCggucgacGAGCGCCucguaGGCgCGGCGCa -3'
miRNA:   3'- -CUGGC-UCGa------CUUGCGG-----CCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 146108 0.71 0.541004
Target:  5'- gGGCCGcggcGCUGA--GCCGGCUCGGgaGCg -3'
miRNA:   3'- -CUGGCu---CGACUugCGGCCGAGCUg-CG- -5'
7661 5' -58.2 NC_001973.1 + 152372 0.71 0.541004
Target:  5'- uGAgCGAGCcGGACgGCCGGCgcgggCgGGCGCg -3'
miRNA:   3'- -CUgGCUCGaCUUG-CGGCCGa----G-CUGCG- -5'
7661 5' -58.2 NC_001973.1 + 95523 0.71 0.560518
Target:  5'- --aCGAGCUGAccagcgccaucgGCGCCGGCgaCGACa- -3'
miRNA:   3'- cugGCUCGACU------------UGCGGCCGa-GCUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.