miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7661 5' -58.2 NC_001973.1 + 158758 0.73 0.465652
Target:  5'- cGACCGAGCgc-GCGCCGaccuacacGCcCGACGCc -3'
miRNA:   3'- -CUGGCUCGacuUGCGGC--------CGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 158692 0.68 0.757059
Target:  5'- cGGCCGAGCgc-GCGCCuaC-CGACGCc -3'
miRNA:   3'- -CUGGCUCGacuUGCGGccGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 158350 0.66 0.826808
Target:  5'- -cCCGcGCcc-GCGCCGGCUCGucaacccGCGCc -3'
miRNA:   3'- cuGGCuCGacuUGCGGCCGAGC-------UGCG- -5'
7661 5' -58.2 NC_001973.1 + 155632 0.67 0.793452
Target:  5'- cGCCGAGCUu-GCaGCCG-CUcCGGCGCc -3'
miRNA:   3'- cUGGCUCGAcuUG-CGGCcGA-GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 153950 0.69 0.699489
Target:  5'- cGCCGAGcCUGcaGACGCCGaGCccgcuccuuUCGACGa -3'
miRNA:   3'- cUGGCUC-GAC--UUGCGGC-CG---------AGCUGCg -5'
7661 5' -58.2 NC_001973.1 + 152372 0.71 0.541004
Target:  5'- uGAgCGAGCcGGACgGCCGGCgcgggCgGGCGCg -3'
miRNA:   3'- -CUgGCUCGaCUUG-CGGCCGa----G-CUGCG- -5'
7661 5' -58.2 NC_001973.1 + 152309 0.66 0.859858
Target:  5'- cGAUCGAGCgcgcucguuaucgugGAcgcgguGCGCgGGCggGGCGCg -3'
miRNA:   3'- -CUGGCUCGa--------------CU------UGCGgCCGagCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 150876 0.71 0.580222
Target:  5'- uGGCCgGAGCcgGGGCGCguuccacgagcuCGGC-CGACGCg -3'
miRNA:   3'- -CUGG-CUCGa-CUUGCG------------GCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 146108 0.71 0.541004
Target:  5'- gGGCCGcggcGCUGA--GCCGGCUCGGgaGCg -3'
miRNA:   3'- -CUGGCu---CGACUugCGGCCGAGCUg-CG- -5'
7661 5' -58.2 NC_001973.1 + 146064 0.69 0.709268
Target:  5'- gGGCCGcGGCgccgaGCCGGCUCGG-GCg -3'
miRNA:   3'- -CUGGC-UCGacuugCGGCCGAGCUgCG- -5'
7661 5' -58.2 NC_001973.1 + 146002 0.74 0.387905
Target:  5'- cGGCUcgggGAGCgGGucCGCCGGCUCGAgCGCg -3'
miRNA:   3'- -CUGG----CUCGaCUu-GCGGCCGAGCU-GCG- -5'
7661 5' -58.2 NC_001973.1 + 145036 0.67 0.802224
Target:  5'- cGGCgCGAGCgcgucGAGCGCCGaCUCGgaacACGUc -3'
miRNA:   3'- -CUG-GCUCGa----CUUGCGGCcGAGC----UGCG- -5'
7661 5' -58.2 NC_001973.1 + 144226 0.69 0.659917
Target:  5'- aGGCCGAaucGCUGGucgagugcGCGCUGGCggacgagGGCGCg -3'
miRNA:   3'- -CUGGCU---CGACU--------UGCGGCCGag-----CUGCG- -5'
7661 5' -58.2 NC_001973.1 + 143531 0.68 0.738198
Target:  5'- -cCCGAuGCUG---GCCGGCUCGAaGCc -3'
miRNA:   3'- cuGGCU-CGACuugCGGCCGAGCUgCG- -5'
7661 5' -58.2 NC_001973.1 + 141753 0.69 0.709268
Target:  5'- -cCCGAGCUGAucgaACGCUcGCUCGAg-- -3'
miRNA:   3'- cuGGCUCGACU----UGCGGcCGAGCUgcg -5'
7661 5' -58.2 NC_001973.1 + 141331 0.68 0.747677
Target:  5'- uACCGcaaaaUGAGCGUCaaGCUCGACGCg -3'
miRNA:   3'- cUGGCucg--ACUUGCGGc-CGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 141113 1.11 0.001432
Target:  5'- gGACCGAGCUGAACGCCGGCUCGACGCa -3'
miRNA:   3'- -CUGGCUCGACUUGCGGCCGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 140106 0.66 0.843736
Target:  5'- --aUGAGC-GAGCGCgCGGCcgUGAUGCu -3'
miRNA:   3'- cugGCUCGaCUUGCG-GCCGa-GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 137004 0.67 0.793452
Target:  5'- -cUCGAGCgcguGCGCCGGgUCGccgaaGCGCc -3'
miRNA:   3'- cuGGCUCGacu-UGCGGCCgAGC-----UGCG- -5'
7661 5' -58.2 NC_001973.1 + 136574 0.74 0.421414
Target:  5'- aGCaUGGcGCUGcGCGCCGGCgCGACGCu -3'
miRNA:   3'- cUG-GCU-CGACuUGCGGCCGaGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.