miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 3' -52.6 NC_001973.1 + 79077 0.7 0.867084
Target:  5'- aGCu-GGAGCgCGACGAcaagUUUCGCGACAa -3'
miRNA:   3'- aCGuuUUUCG-GCUGCU----AGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 84628 0.7 0.874592
Target:  5'- gUGCAAAAauacgaacugcuGGCCcgGGCGGUgaCUCGCGACAa -3'
miRNA:   3'- -ACGUUUU------------UCGG--CUGCUA--GGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 119402 0.7 0.881875
Target:  5'- gUGCAAAcgggcGUCGACGcGUUUCGCGACAu -3'
miRNA:   3'- -ACGUUUuu---CGGCUGC-UAGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 38959 0.7 0.887535
Target:  5'- cGCgAAGAGGCCGGCGAgcguuuauaaaCCGaCGGCGg -3'
miRNA:   3'- aCG-UUUUUCGGCUGCUag---------GGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 49664 0.69 0.902317
Target:  5'- aGCAAAucGcCCGGCuGAUCgaCGCGGCGa -3'
miRNA:   3'- aCGUUUuuC-GGCUG-CUAGg-GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 35197 0.69 0.914737
Target:  5'- cGCGAucaacGCCGACG-UCaCCGcCGACAu -3'
miRNA:   3'- aCGUUuuu--CGGCUGCuAG-GGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 85635 0.69 0.914737
Target:  5'- cGCAGucuaucaucuuGAAGCCGGCGAUCagCCG-GACc -3'
miRNA:   3'- aCGUU-----------UUUCGGCUGCUAG--GGCgCUGu -5'
7662 3' -52.6 NC_001973.1 + 39755 0.69 0.914737
Target:  5'- gGCGAGgcccGAGCCGAagcugacguacaCGAcUCCGCGGCGc -3'
miRNA:   3'- aCGUUU----UUCGGCU------------GCUaGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 10595 0.69 0.920004
Target:  5'- gGCAAAGuauuggcAGuuGGCGAggccCUCGCGGCAc -3'
miRNA:   3'- aCGUUUU-------UCggCUGCUa---GGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 4846 0.69 0.926167
Target:  5'- cGCuuAAAGUCGGCGGg--CGCGACGu -3'
miRNA:   3'- aCGuuUUUCGGCUGCUaggGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 158936 0.69 0.926167
Target:  5'- cGCGAccGAGCCGccCGcgUCCGCGACc -3'
miRNA:   3'- aCGUUu-UUCGGCu-GCuaGGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 134795 0.69 0.931508
Target:  5'- aUGCGGcc-GUCGGCGugGUgCCGCGACAg -3'
miRNA:   3'- -ACGUUuuuCGGCUGC--UAgGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 70449 0.69 0.931508
Target:  5'- cGCucGGAGCUcacGCGAUCCaccaGCGGCAu -3'
miRNA:   3'- aCGuuUUUCGGc--UGCUAGGg---CGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 30422 0.68 0.941444
Target:  5'- cGCGAAcuGCCGACGG-CacaCGgGACAc -3'
miRNA:   3'- aCGUUUuuCGGCUGCUaGg--GCgCUGU- -5'
7662 3' -52.6 NC_001973.1 + 117939 0.68 0.946042
Target:  5'- cGCGGcAAGCgCGACGGg--CGCGACAu -3'
miRNA:   3'- aCGUUuUUCG-GCUGCUaggGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 8632 0.68 0.946042
Target:  5'- cGCc-GAGGCCGACGAgaaacgCCaaCGUGACGc -3'
miRNA:   3'- aCGuuUUUCGGCUGCUa-----GG--GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 89027 0.68 0.946042
Target:  5'- gGCcuAAAGUaggaGGCGAUCUCGCGcCAc -3'
miRNA:   3'- aCGuuUUUCGg---CUGCUAGGGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 14379 0.68 0.946042
Target:  5'- cGCGGcGAGGCCGGacaGuagCCCGCGAaCAg -3'
miRNA:   3'- aCGUU-UUUCGGCUg--Cua-GGGCGCU-GU- -5'
7662 3' -52.6 NC_001973.1 + 7443 0.68 0.950395
Target:  5'- cGCAcguGAGCuCGGCGGUgCggCGCGACGa -3'
miRNA:   3'- aCGUuu-UUCG-GCUGCUAgG--GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 43975 0.68 0.950395
Target:  5'- gGCGGccucucuGCCGGCGAUCCaGCG-CAg -3'
miRNA:   3'- aCGUUuuu----CGGCUGCUAGGgCGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.