miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 5' -62.6 NC_001973.1 + 18205 0.65 0.653084
Target:  5'- -cCGCCGCCGcguagcuGCGGCcgaacaccgucaggUGGCacgcgcugCUCGAg -3'
miRNA:   3'- caGCGGCGGCu------CGCCG--------------ACCGa-------GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 131853 0.66 0.646245
Target:  5'- cGUCGUCGUCGAuugcuucgcaauGCGGCaGGCacagacgcgCUCGGu -3'
miRNA:   3'- -CAGCGGCGGCU------------CGCCGaCCGa--------GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 3838 0.66 0.646245
Target:  5'- cUCGCCGgCGAuuugGGCcGGCUCgUCGAu -3'
miRNA:   3'- cAGCGGCgGCUcg--CCGaCCGAG-AGCU- -5'
7662 5' -62.6 NC_001973.1 + 81818 0.66 0.640378
Target:  5'- -gCGCCGCCG-GCGGCgacgagacgacgaGCUCaggUCGAc -3'
miRNA:   3'- caGCGGCGGCuCGCCGac-----------CGAG---AGCU- -5'
7662 5' -62.6 NC_001973.1 + 49127 0.66 0.636465
Target:  5'- -aCGCgGUgGAGCugcaGGCgUGGCUgCUCGAg -3'
miRNA:   3'- caGCGgCGgCUCG----CCG-ACCGA-GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 141558 0.66 0.636465
Target:  5'- cUCGCCGCCGcGCaaGCUcGCgCUCGAc -3'
miRNA:   3'- cAGCGGCGGCuCGc-CGAcCGaGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 104276 0.66 0.636465
Target:  5'- -cCGCCGCCGGGCuGGUcgUGuCUCuguUCGAa -3'
miRNA:   3'- caGCGGCGGCUCG-CCG--ACcGAG---AGCU- -5'
7662 5' -62.6 NC_001973.1 + 119873 0.66 0.630596
Target:  5'- cGUCGUCGCCGgcgacuaucAGCgccccuuggagcccgGGCacGCUCUCGAu -3'
miRNA:   3'- -CAGCGGCGGC---------UCG---------------CCGacCGAGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 89098 0.66 0.626683
Target:  5'- uGUCGUCGUCGAGCuccgcgGGC-GcGCUCUCc- -3'
miRNA:   3'- -CAGCGGCGGCUCG------CCGaC-CGAGAGcu -5'
7662 5' -62.6 NC_001973.1 + 21695 0.66 0.616905
Target:  5'- -gCGCCGCCGu-CGGCUGGU---CGAa -3'
miRNA:   3'- caGCGGCGGCucGCCGACCGagaGCU- -5'
7662 5' -62.6 NC_001973.1 + 143945 0.66 0.607138
Target:  5'- cGUCGgcgggaaCGCCGAGUGGCaGGUggaCUCGc -3'
miRNA:   3'- -CAGCg------GCGGCUCGCCGaCCGa--GAGCu -5'
7662 5' -62.6 NC_001973.1 + 48103 0.66 0.607138
Target:  5'- cUCGCCGCCGAGCaGCcGGUcaagUUUGu -3'
miRNA:   3'- cAGCGGCGGCUCGcCGaCCGa---GAGCu -5'
7662 5' -62.6 NC_001973.1 + 46485 0.67 0.587659
Target:  5'- cGUCGCCGUCGcccgcGCGGaC-GGC-CUCGGc -3'
miRNA:   3'- -CAGCGGCGGCu----CGCC-GaCCGaGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 93773 0.67 0.587659
Target:  5'- -cCGCCGCCGucgauucccaAGCGGUacgccUGGCUCa--- -3'
miRNA:   3'- caGCGGCGGC----------UCGCCG-----ACCGAGagcu -5'
7662 5' -62.6 NC_001973.1 + 134132 0.67 0.587659
Target:  5'- uUCGUCGCCGGGCGGa----UCUCGu -3'
miRNA:   3'- cAGCGGCGGCUCGCCgaccgAGAGCu -5'
7662 5' -62.6 NC_001973.1 + 55234 0.67 0.577961
Target:  5'- -gCGgCGgCGGGCGGCgagaggccuGCUCUCGAc -3'
miRNA:   3'- caGCgGCgGCUCGCCGac-------CGAGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 53869 0.67 0.577961
Target:  5'- -gCGCCGCCGAgcGCGGCggccgUGGCcgcaUCGu -3'
miRNA:   3'- caGCGGCGGCU--CGCCG-----ACCGag--AGCu -5'
7662 5' -62.6 NC_001973.1 + 109116 0.67 0.558677
Target:  5'- uGUUGaaCCGCCGcGGCGGC-GGcCUCUUGGg -3'
miRNA:   3'- -CAGC--GGCGGC-UCGCCGaCC-GAGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 140116 0.67 0.549102
Target:  5'- -gCGCgGCCGuGauGCUGGUguUCUCGGa -3'
miRNA:   3'- caGCGgCGGCuCgcCGACCG--AGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 36990 0.68 0.530112
Target:  5'- cUCGCCGCCcaauuccagaGGGCGGC-GaGCUCgUUGAa -3'
miRNA:   3'- cAGCGGCGG----------CUCGCCGaC-CGAG-AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.