miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7663 3' -55.6 NC_001973.1 + 155106 0.71 0.707981
Target:  5'- --aAGCCGCCGUcGCuucuaUCACGGGCg -3'
miRNA:   3'- agcUCGGCGGCAaCGcua--AGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 152375 0.69 0.793863
Target:  5'- gCGAGCCggacgGCCGgcGCGG---GCGGGCg -3'
miRNA:   3'- aGCUCGG-----CGGCaaCGCUaagUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 152311 0.74 0.536459
Target:  5'- aUCGAGCgCGCuCGUUaucguggacGCGGUgCGCGGGCg -3'
miRNA:   3'- -AGCUCG-GCG-GCAA---------CGCUAaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 146013 0.72 0.667763
Target:  5'- gCGGGuCCGCCGgcucgagcGCGggUCgACGGACg -3'
miRNA:   3'- aGCUC-GGCGGCaa------CGCuaAG-UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 140526 0.72 0.637267
Target:  5'- -aGAGCaCGCUGcUGCGAUUCAUcGACu -3'
miRNA:   3'- agCUCG-GCGGCaACGCUAAGUGcCUG- -5'
7663 3' -55.6 NC_001973.1 + 139818 1.11 0.002634
Target:  5'- aUCGAGCCGCCGUUGCGAUUCACGGACg -3'
miRNA:   3'- -AGCUCGGCGGCAACGCUAAGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 134992 0.69 0.793863
Target:  5'- cCGGGCCGUCGg-GCGGgagC-CGGGCa -3'
miRNA:   3'- aGCUCGGCGGCaaCGCUaa-GuGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 132533 0.66 0.925673
Target:  5'- -aGAgGCCGCCGggcGCGGcg-GCGGGCu -3'
miRNA:   3'- agCU-CGGCGGCaa-CGCUaagUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 125677 0.68 0.868143
Target:  5'- aCGuGCacgGCgGUUGCGGU-CACGGAa -3'
miRNA:   3'- aGCuCGg--CGgCAACGCUAaGUGCCUg -5'
7663 3' -55.6 NC_001973.1 + 124856 0.68 0.867402
Target:  5'- -gGAGCCcuacgagGCCa-UGCGGgacgUCGCGGACg -3'
miRNA:   3'- agCUCGG-------CGGcaACGCUa---AGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 124232 0.66 0.920206
Target:  5'- aCGgccaGGCCGCCGUuuacgaagcgcUGCuGUgCAUGGACg -3'
miRNA:   3'- aGC----UCGGCGGCA-----------ACGcUAaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 123242 0.66 0.924058
Target:  5'- gCGucCCGCCGUUGCGucaacagaucgaccGUUCgGCGGuACa -3'
miRNA:   3'- aGCucGGCGGCAACGC--------------UAAG-UGCC-UG- -5'
7663 3' -55.6 NC_001973.1 + 118347 0.68 0.868143
Target:  5'- uUCGuGCgCGCCGUgaagcGCGAgUUCGacuCGGGCg -3'
miRNA:   3'- -AGCuCG-GCGGCAa----CGCU-AAGU---GCCUG- -5'
7663 3' -55.6 NC_001973.1 + 112816 0.66 0.930903
Target:  5'- cUCG-GCCGUCGUgUGCGugaUCAugaccCGGGCg -3'
miRNA:   3'- -AGCuCGGCGGCA-ACGCua-AGU-----GCCUG- -5'
7663 3' -55.6 NC_001973.1 + 109550 0.68 0.852158
Target:  5'- gCGAGCCGCgcgaacgccggcgCGggGCGggUUuCGGGCg -3'
miRNA:   3'- aGCUCGGCG-------------GCaaCGCuaAGuGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 109501 0.69 0.806335
Target:  5'- aCGAacgccgccGCCGCCGUucgccgcuuggcucuUGCGcUUUugGGGCg -3'
miRNA:   3'- aGCU--------CGGCGGCA---------------ACGCuAAGugCCUG- -5'
7663 3' -55.6 NC_001973.1 + 108253 0.66 0.914503
Target:  5'- aUCGAcgGCUGCCGgcGCGcggagACGGACc -3'
miRNA:   3'- -AGCU--CGGCGGCaaCGCuaag-UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 106589 0.67 0.908565
Target:  5'- cUCGGcGCCGCCGUcaaGCGAacgaGCGcGACc -3'
miRNA:   3'- -AGCU-CGGCGGCAa--CGCUaag-UGC-CUG- -5'
7663 3' -55.6 NC_001973.1 + 103904 0.71 0.711957
Target:  5'- gCGAGCCGCCGcggcGCGAcgaggagcgcgucgUCGCGGcGCg -3'
miRNA:   3'- aGCUCGGCGGCaa--CGCUa-------------AGUGCC-UG- -5'
7663 3' -55.6 NC_001973.1 + 103289 0.66 0.930903
Target:  5'- gCGAGUgGC---UGCcGUUCGCGGACg -3'
miRNA:   3'- aGCUCGgCGgcaACGcUAAGUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.