miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7666 3' -59 NC_001973.1 + 43931 0.66 0.829422
Target:  5'- -aAGAcGCcCUCGACGgCCgcgaaGGCCACCa -3'
miRNA:   3'- agUCUaCGaGGGCUGUgGG-----CCGGUGG- -5'
7666 3' -59 NC_001973.1 + 30383 0.66 0.821189
Target:  5'- cUCGGGUGCgggCCGGCGCggCGGCgGCg -3'
miRNA:   3'- -AGUCUACGag-GGCUGUGg-GCCGgUGg -5'
7666 3' -59 NC_001973.1 + 8538 0.66 0.812794
Target:  5'- -----gGCUCCaagaGACugCaGGCCGCCu -3'
miRNA:   3'- agucuaCGAGGg---CUGugGgCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 80016 0.66 0.812794
Target:  5'- cCAGcaGCUCCCGGCAgugUuuGGCUAUg -3'
miRNA:   3'- aGUCuaCGAGGGCUGU---GggCCGGUGg -5'
7666 3' -59 NC_001973.1 + 155438 0.66 0.804244
Target:  5'- cUCGGGcccggugagccUGCUCUCGA-GCCCGGUgaGCCc -3'
miRNA:   3'- -AGUCU-----------ACGAGGGCUgUGGGCCGg-UGG- -5'
7666 3' -59 NC_001973.1 + 77554 0.66 0.804244
Target:  5'- gUCGGc-GCUCCUGACGa-UGGCcCACCa -3'
miRNA:   3'- -AGUCuaCGAGGGCUGUggGCCG-GUGG- -5'
7666 3' -59 NC_001973.1 + 124778 0.66 0.795548
Target:  5'- -----cGCUCUguuCGACuAUCUGGCCGCCg -3'
miRNA:   3'- agucuaCGAGG---GCUG-UGGGCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 156083 0.66 0.795548
Target:  5'- cCAGGUaUUCCCaGCAgCCGcaGCCGCCg -3'
miRNA:   3'- aGUCUAcGAGGGcUGUgGGC--CGGUGG- -5'
7666 3' -59 NC_001973.1 + 39853 0.66 0.795548
Target:  5'- gCAGAUGCagaCCGcccaaauacugcACGCUCGGCggCACCg -3'
miRNA:   3'- aGUCUACGag-GGC------------UGUGGGCCG--GUGG- -5'
7666 3' -59 NC_001973.1 + 41059 0.67 0.768656
Target:  5'- aUCGGGcuUGaaCCCGAUcgacCCCGGCCGgCg -3'
miRNA:   3'- -AGUCU--ACgaGGGCUGu---GGGCCGGUgG- -5'
7666 3' -59 NC_001973.1 + 75253 0.67 0.768656
Target:  5'- -----cGUUCUCGACACCCG-CCugCu -3'
miRNA:   3'- agucuaCGAGGGCUGUGGGCcGGugG- -5'
7666 3' -59 NC_001973.1 + 94526 0.67 0.750141
Target:  5'- -----cGCcccgCCCGGCGCgCCGGUCAUCg -3'
miRNA:   3'- agucuaCGa---GGGCUGUG-GGCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 25799 0.67 0.740732
Target:  5'- -----cGCUCCacCGGCGCgCGGCaCACCa -3'
miRNA:   3'- agucuaCGAGG--GCUGUGgGCCG-GUGG- -5'
7666 3' -59 NC_001973.1 + 159217 0.67 0.740732
Target:  5'- cCAGG-GCgaucgagCCCGACaACCCGuuguugucGCCGCCc -3'
miRNA:   3'- aGUCUaCGa------GGGCUG-UGGGC--------CGGUGG- -5'
7666 3' -59 NC_001973.1 + 139647 0.67 0.731235
Target:  5'- gCAGccGgaCCCGAC-CgCCGGCCAgCCc -3'
miRNA:   3'- aGUCuaCgaGGGCUGuG-GGCCGGU-GG- -5'
7666 3' -59 NC_001973.1 + 103844 0.68 0.712005
Target:  5'- aCAGAUGgaUCCCca-AgUCGGCCGCCg -3'
miRNA:   3'- aGUCUACg-AGGGcugUgGGCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 121853 0.68 0.712005
Target:  5'- uUCGGccGC-CgCGACGCCCG-CCACUa -3'
miRNA:   3'- -AGUCuaCGaGgGCUGUGGGCcGGUGG- -5'
7666 3' -59 NC_001973.1 + 44149 0.68 0.70229
Target:  5'- gUAGAaGCa-CCG-CGCCuCGGCCACCu -3'
miRNA:   3'- aGUCUaCGagGGCuGUGG-GCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 32394 0.68 0.70229
Target:  5'- aCGGGgcUGCUCCaCGGCgacaGCCCGGCgaaCACg -3'
miRNA:   3'- aGUCU--ACGAGG-GCUG----UGGGCCG---GUGg -5'
7666 3' -59 NC_001973.1 + 102480 0.68 0.682701
Target:  5'- -gAGAUuuacggGCUCgCCGACACgCGGCCcuucuucgACCg -3'
miRNA:   3'- agUCUA------CGAG-GGCUGUGgGCCGG--------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.