miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7666 3' -59 NC_001973.1 + 160100 0.69 0.623241
Target:  5'- cCAaGUGCUUuuGGCGCuuGGCCugUu -3'
miRNA:   3'- aGUcUACGAGggCUGUGggCCGGugG- -5'
7666 3' -59 NC_001973.1 + 159217 0.67 0.740732
Target:  5'- cCAGG-GCgaucgagCCCGACaACCCGuuguugucGCCGCCc -3'
miRNA:   3'- aGUCUaCGa------GGGCUG-UGGGC--------CGGUGG- -5'
7666 3' -59 NC_001973.1 + 156083 0.66 0.795548
Target:  5'- cCAGGUaUUCCCaGCAgCCGcaGCCGCCg -3'
miRNA:   3'- aGUCUAcGAGGGcUGUgGGC--CGGUGG- -5'
7666 3' -59 NC_001973.1 + 155438 0.66 0.804244
Target:  5'- cUCGGGcccggugagccUGCUCUCGA-GCCCGGUgaGCCc -3'
miRNA:   3'- -AGUCU-----------ACGAGGGCUgUGGGCCGg-UGG- -5'
7666 3' -59 NC_001973.1 + 139647 0.67 0.731235
Target:  5'- gCAGccGgaCCCGAC-CgCCGGCCAgCCc -3'
miRNA:   3'- aGUCuaCgaGGGCUGuG-GGCCGGU-GG- -5'
7666 3' -59 NC_001973.1 + 138752 0.74 0.359785
Target:  5'- aCAGGUcCUCguCCGuGCACCCGGCCGCg -3'
miRNA:   3'- aGUCUAcGAG--GGC-UGUGGGCCGGUGg -5'
7666 3' -59 NC_001973.1 + 138594 0.69 0.643114
Target:  5'- cCGGAUGCUUgacgagcaCCGACGCCaagcgucugcaCGGCUgcGCCa -3'
miRNA:   3'- aGUCUACGAG--------GGCUGUGG-----------GCCGG--UGG- -5'
7666 3' -59 NC_001973.1 + 138458 1.11 0.001201
Target:  5'- gUCAGAUGCUCCCGACACCCGGCCACCu -3'
miRNA:   3'- -AGUCUACGAGGGCUGUGGGCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 135664 0.69 0.623241
Target:  5'- gCAGGUGUUggCCGugGCgCUGGCCugCg -3'
miRNA:   3'- aGUCUACGAg-GGCugUG-GGCCGGugG- -5'
7666 3' -59 NC_001973.1 + 124778 0.66 0.795548
Target:  5'- -----cGCUCUguuCGACuAUCUGGCCGCCg -3'
miRNA:   3'- agucuaCGAGG---GCUG-UGGGCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 121853 0.68 0.712005
Target:  5'- uUCGGccGC-CgCGACGCCCG-CCACUa -3'
miRNA:   3'- -AGUCuaCGaGgGCUGUGGGCcGGUGG- -5'
7666 3' -59 NC_001973.1 + 121673 0.69 0.643114
Target:  5'- -----cGCUCgCGGCGCCCGGaUACCg -3'
miRNA:   3'- agucuaCGAGgGCUGUGGGCCgGUGG- -5'
7666 3' -59 NC_001973.1 + 108306 0.7 0.592507
Target:  5'- cCAGGUGCUCUgCGACgagauggccauuuGCgCGuGCCGCCa -3'
miRNA:   3'- aGUCUACGAGG-GCUG-------------UGgGC-CGGUGG- -5'
7666 3' -59 NC_001973.1 + 103844 0.68 0.712005
Target:  5'- aCAGAUGgaUCCCca-AgUCGGCCGCCg -3'
miRNA:   3'- aGUCUACg-AGGGcugUgGGCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 102480 0.68 0.682701
Target:  5'- -gAGAUuuacggGCUCgCCGACACgCGGCCcuucuucgACCg -3'
miRNA:   3'- agUCUA------CGAG-GGCUGUGgGCCGG--------UGG- -5'
7666 3' -59 NC_001973.1 + 94526 0.67 0.750141
Target:  5'- -----cGCcccgCCCGGCGCgCCGGUCAUCg -3'
miRNA:   3'- agucuaCGa---GGGCUGUG-GGCCGGUGG- -5'
7666 3' -59 NC_001973.1 + 81893 0.7 0.603392
Target:  5'- gUCGGccGCgUCCCGACGCaCCa-CCACCg -3'
miRNA:   3'- -AGUCuaCG-AGGGCUGUG-GGccGGUGG- -5'
7666 3' -59 NC_001973.1 + 80016 0.66 0.812794
Target:  5'- cCAGcaGCUCCCGGCAgugUuuGGCUAUg -3'
miRNA:   3'- aGUCuaCGAGGGCUGU---GggCCGGUGg -5'
7666 3' -59 NC_001973.1 + 77554 0.66 0.804244
Target:  5'- gUCGGc-GCUCCUGACGa-UGGCcCACCa -3'
miRNA:   3'- -AGUCuaCGAGGGCUGUggGCCG-GUGG- -5'
7666 3' -59 NC_001973.1 + 75253 0.67 0.768656
Target:  5'- -----cGUUCUCGACACCCG-CCugCu -3'
miRNA:   3'- agucuaCGAGGGCUGUGGGCcGGugG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.