miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7669 5' -55.2 NC_001973.1 + 158827 0.68 0.867055
Target:  5'- aGCCGgcgGccGAGCGcGCGgaCGAGCCg -3'
miRNA:   3'- -CGGCaa-CuaCUCGCuCGCggGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 158752 0.68 0.89494
Target:  5'- aGCCGgcGAccGAGCGcGCGCC--GACCu -3'
miRNA:   3'- -CGGCaaCUa-CUCGCuCGCGGgcUUGG- -5'
7669 5' -55.2 NC_001973.1 + 158686 0.69 0.843946
Target:  5'- aGCCGgcgGccGAGCGcGCGCCU--ACCg -3'
miRNA:   3'- -CGGCaa-CuaCUCGCuCGCGGGcuUGG- -5'
7669 5' -55.2 NC_001973.1 + 158621 0.68 0.881433
Target:  5'- cGCCGUUGccGccgccCGGcGCGCCCGAcgACCc -3'
miRNA:   3'- -CGGCAACuaCuc---GCU-CGCGGGCU--UGG- -5'
7669 5' -55.2 NC_001973.1 + 158384 0.68 0.881433
Target:  5'- cGCCGacucguccGAUc-GCGcccGCGCCCGAGCCg -3'
miRNA:   3'- -CGGCaa------CUAcuCGCu--CGCGGGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 157724 0.69 0.835856
Target:  5'- uGCCGUUGAcgaggugGAGCGcGGUGCgCGcGCUg -3'
miRNA:   3'- -CGGCAACUa------CUCGC-UCGCGgGCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 155521 0.67 0.929968
Target:  5'- uGCCGU---UGAGCGuccCGCCC-AGCCc -3'
miRNA:   3'- -CGGCAacuACUCGCuc-GCGGGcUUGG- -5'
7669 5' -55.2 NC_001973.1 + 147000 0.7 0.80175
Target:  5'- cCUGUUGAUGucGGaCGAGgGCaCGAACCg -3'
miRNA:   3'- cGGCAACUAC--UC-GCUCgCGgGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 145999 0.69 0.843946
Target:  5'- aGCCGgcucGggGAGCGGGUccgccgGCUCGAGCg -3'
miRNA:   3'- -CGGCaa--CuaCUCGCUCG------CGGGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 145087 0.67 0.901356
Target:  5'- cGCCGgcGAgggucUGAGCuucaGAGUGgCCGAcGCCa -3'
miRNA:   3'- -CGGCaaCU-----ACUCG----CUCGCgGGCU-UGG- -5'
7669 5' -55.2 NC_001973.1 + 145026 0.67 0.913501
Target:  5'- cGCCcgagUGcgGcGCGAGCGCgUCGAGCg -3'
miRNA:   3'- -CGGca--ACuaCuCGCUCGCG-GGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 140093 0.78 0.389926
Target:  5'- cGUCGUcaggucGAUGAGCGAGCGCgCG-GCCg -3'
miRNA:   3'- -CGGCAa-----CUACUCGCUCGCGgGCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 140028 0.67 0.919225
Target:  5'- aGCaCGgUGgcGGGCu-GCGCCCGGGCg -3'
miRNA:   3'- -CG-GCaACuaCUCGcuCGCGGGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 139628 0.69 0.851847
Target:  5'- uGUCGUUGAUgGAGaacGCGCagCCGGACCc -3'
miRNA:   3'- -CGGCAACUA-CUCgcuCGCG--GGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 133863 0.69 0.85879
Target:  5'- cGCCGUccGUGuAGCGcaacucgGGCGCCUGcACCu -3'
miRNA:   3'- -CGGCAacUAC-UCGC-------UCGCGGGCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 133663 1.15 0.001681
Target:  5'- cGCCGUUGAUGAGCGAGCGCCCGAACCg -3'
miRNA:   3'- -CGGCAACUACUCGCUCGCGGGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 125628 0.67 0.907544
Target:  5'- aCCGgaGAuuUGGGCGGGCcGUUCGggUCg -3'
miRNA:   3'- cGGCaaCU--ACUCGCUCG-CGGGCuuGG- -5'
7669 5' -55.2 NC_001973.1 + 124796 0.66 0.939772
Target:  5'- gGCCGcc----GGCGAGgGCCgGGGCCu -3'
miRNA:   3'- -CGGCaacuacUCGCUCgCGGgCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 122841 0.72 0.697201
Target:  5'- cGCCGUUGAUGcGCacgcuGUGCCCGc-CCa -3'
miRNA:   3'- -CGGCAACUACuCGcu---CGCGGGCuuGG- -5'
7669 5' -55.2 NC_001973.1 + 121653 0.7 0.80175
Target:  5'- cGCCGccucGAaGGGCGcgucgcucgcGGCGCCCGGauACCg -3'
miRNA:   3'- -CGGCaa--CUaCUCGC----------UCGCGGGCU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.