miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7670 3' -54 NC_001973.1 + 157729 0.67 0.920513
Target:  5'- -uUgACGAggugGAGCGCGGUGCgCGCg- -3'
miRNA:   3'- cuAgUGCUa---CUCGUGCUACGgGUGgu -5'
7670 3' -54 NC_001973.1 + 152337 0.66 0.96185
Target:  5'- cGGUgCGCGGgcgGGGCGCGAUaGCgCCGCgCGa -3'
miRNA:   3'- -CUA-GUGCUa--CUCGUGCUA-CG-GGUG-GU- -5'
7670 3' -54 NC_001973.1 + 148076 0.66 0.96185
Target:  5'- uGUCGCGuaGUGGGCcaucaGAgUGUCCACCAg -3'
miRNA:   3'- cUAGUGC--UACUCGug---CU-ACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 136884 0.67 0.920513
Target:  5'- -cUCgACGGUGGGCAC---GUCCACCAc -3'
miRNA:   3'- cuAG-UGCUACUCGUGcuaCGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 133597 0.67 0.936974
Target:  5'- aGGUCACGuagauggugucgccGAGCACGAaGCCgAUCAg -3'
miRNA:   3'- -CUAGUGCua------------CUCGUGCUaCGGgUGGU- -5'
7670 3' -54 NC_001973.1 + 132949 1.08 0.005011
Target:  5'- uGAUCACGAUGAGCACGAUGCCCACCAc -3'
miRNA:   3'- -CUAGUGCUACUCGUGCUACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 128174 0.75 0.527818
Target:  5'- uGAUCACauccuGCGCGAUGUCCGCCAu -3'
miRNA:   3'- -CUAGUGcuacuCGUGCUACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 126590 0.68 0.895784
Target:  5'- cGAUCACGuccuGgGCGAUGUCgGCCAu -3'
miRNA:   3'- -CUAGUGCuacuCgUGCUACGGgUGGU- -5'
7670 3' -54 NC_001973.1 + 122846 0.67 0.94131
Target:  5'- ----uUGAUGcGCACGcuGUGCCCGCCc -3'
miRNA:   3'- cuaguGCUACuCGUGC--UACGGGUGGu -5'
7670 3' -54 NC_001973.1 + 121505 0.66 0.954342
Target:  5'- --gCGCGAaGucguucAGCGCGAacgccgccagcuUGCCCACCAc -3'
miRNA:   3'- cuaGUGCUaC------UCGUGCU------------ACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 120362 0.66 0.958212
Target:  5'- cGAUCuggcggccaagACGgcGAGUuuggcgggGCGAUGUCCGCCGc -3'
miRNA:   3'- -CUAG-----------UGCuaCUCG--------UGCUACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 119305 0.67 0.926083
Target:  5'- cGUCGCGuucaaGAGCGgguCGgcGCCCGCCGc -3'
miRNA:   3'- cUAGUGCua---CUCGU---GCuaCGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 118103 0.67 0.93648
Target:  5'- cGUgACGGUGGGCGCGgcGCUCAagCAg -3'
miRNA:   3'- cUAgUGCUACUCGUGCuaCGGGUg-GU- -5'
7670 3' -54 NC_001973.1 + 114421 0.67 0.931405
Target:  5'- cGGUCGCGAgccUGcGCGCGAgccgGCUCGCgAa -3'
miRNA:   3'- -CUAGUGCU---ACuCGUGCUa---CGGGUGgU- -5'
7670 3' -54 NC_001973.1 + 109575 0.67 0.93648
Target:  5'- ---gGCGGguuucGGGCGCGAgccGUCCACCAg -3'
miRNA:   3'- cuagUGCUa----CUCGUGCUa--CGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 101958 0.71 0.743105
Target:  5'- cGAUCGUGGUGgcGGCgACGAUGCgCGCCAg -3'
miRNA:   3'- -CUAGUGCUAC--UCG-UGCUACGgGUGGU- -5'
7670 3' -54 NC_001973.1 + 91574 0.67 0.943633
Target:  5'- uGUCGCGAUGAGCuuuugaaacgcuCGAucgccuugucgcacUGCuCCACCu -3'
miRNA:   3'- cUAGUGCUACUCGu-----------GCU--------------ACG-GGUGGu -5'
7670 3' -54 NC_001973.1 + 78180 0.67 0.920513
Target:  5'- cAUCAUGcUGGGCACGGgcaUGCgCAUCAa -3'
miRNA:   3'- cUAGUGCuACUCGUGCU---ACGgGUGGU- -5'
7670 3' -54 NC_001973.1 + 74647 0.79 0.354948
Target:  5'- --gCGCGGUGAGCGgGuaguUGCCCACCGg -3'
miRNA:   3'- cuaGUGCUACUCGUgCu---ACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 70760 0.68 0.908635
Target:  5'- aGUCAUGGcacuugUGAGCGgGGcgcUGUCCACCAa -3'
miRNA:   3'- cUAGUGCU------ACUCGUgCU---ACGGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.