miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7678 5' -57.5 NC_001973.1 + 2673 0.92 0.030836
Target:  5'- -cGCCCGAGCUCGAGCUCGGCcGACGc -3'
miRNA:   3'- uaCGGGUUUGAGCUCGAGCCGcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 72263 0.92 0.031428
Target:  5'- -aGCCCGAugacaucaucccuaACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUU--------------UGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 151053 0.91 0.03728
Target:  5'- uUGCagguCAGACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uACGg---GUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 12180 0.9 0.038303
Target:  5'- cAUGCCUAAACU-GAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAgCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 160454 0.9 0.038303
Target:  5'- cAUGCCUAAACU-GAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGAgCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 150948 0.9 0.040431
Target:  5'- -aGgUCAGACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uaCgGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 127502 0.89 0.04504
Target:  5'- cAUGCCUAAACU-GAGCUCGGCGGGCGc -3'
miRNA:   3'- -UACGGGUUUGAgCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 160534 0.88 0.057362
Target:  5'- -cGCCUAAACU-GAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUUUGAgCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 127348 0.88 0.057362
Target:  5'- -cGCCUAAACU-GAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUUUGAgCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 72018 0.88 0.060515
Target:  5'- --uCCCcAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uacGGGuUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 71931 0.88 0.060515
Target:  5'- --uCCCuAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uacGGGuUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 72113 0.88 0.060515
Target:  5'- --uCCCuAACUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uacGGGuUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 151342 0.86 0.074886
Target:  5'- -aGgUCAGAUUCGAGCUCGGCGGACGc -3'
miRNA:   3'- uaCgGGUUUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 21149 0.86 0.074886
Target:  5'- cAUGCUUc-GCUCGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGuuUGAGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 72460 0.85 0.090098
Target:  5'- cAUGCCU-AAC-CGAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGuUUGaGCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 2792 0.84 0.105432
Target:  5'- -cGCCUAAAUU-GAGCUCGGCGGACGc -3'
miRNA:   3'- uaCGGGUUUGAgCUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 128970 0.83 0.120051
Target:  5'- cAUGCUCAAACUCGAGCUCGGCcaACGc -3'
miRNA:   3'- -UACGGGUUUGAGCUCGAGCCGccUGC- -5'
7678 5' -57.5 NC_001973.1 + 12258 0.83 0.123193
Target:  5'- cAUGCCUAAAC-CcAGCUCGGCGGACGc -3'
miRNA:   3'- -UACGGGUUUGaGcUCGAGCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 12417 0.81 0.159057
Target:  5'- --uCCCAAACUUGAGCUCGGCuGACGc -3'
miRNA:   3'- uacGGGUUUGAGCUCGAGCCGcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 72341 0.81 0.161892
Target:  5'- -aGCCCGAugacaucaucccuaACUCGAGCUCGGCcGACGc -3'
miRNA:   3'- uaCGGGUU--------------UGAGCUCGAGCCGcCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.