miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7679 3' -53.8 NC_001973.1 + 160789 0.94 0.051803
Target:  5'- cGCcCAAGCUCGAGCUCGGCgGGCGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 160690 0.85 0.166832
Target:  5'- uGCcuuAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaguUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 160612 0.94 0.049051
Target:  5'- uGCcCAAACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 160534 0.79 0.377011
Target:  5'- cGCcUAAACU-GAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAgCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 160456 0.78 0.402336
Target:  5'- uGCcUAAACU-GAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAgCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 160377 0.94 0.045187
Target:  5'- cGCcCAAGCUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CGaGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 159102 0.69 0.876252
Target:  5'- -aUCAAACUgGcguuGCUCGGCC--CGCGa -3'
miRNA:   3'- cgAGUUUGAgCu---CGAGCCGGuuGCGC- -5'
7679 3' -53.8 NC_001973.1 + 155605 0.78 0.402336
Target:  5'- uGCUUcuGAGCUUGcAGCUCGGCCAGcCGCc -3'
miRNA:   3'- -CGAG--UUUGAGC-UCGAGCCGGUU-GCGc -5'
7679 3' -53.8 NC_001973.1 + 154020 0.68 0.931528
Target:  5'- aGCUCAugUUUGAGCUUgucgccgGGCcCGAUGCa -3'
miRNA:   3'- -CGAGUuuGAGCUCGAG-------CCG-GUUGCGc -5'
7679 3' -53.8 NC_001973.1 + 152364 0.76 0.503688
Target:  5'- cGCgCGAAUgagCGAGCcggaCGGCCGGCGCGg -3'
miRNA:   3'- -CGaGUUUGa--GCUCGa---GCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 151342 0.91 0.075726
Target:  5'- aGgUCAGAUUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CgAGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 151057 0.95 0.040494
Target:  5'- aGgUCAGACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CgAGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 150948 0.95 0.040494
Target:  5'- aGgUCAGACUCGAGCUCGGCgGACGCGu -3'
miRNA:   3'- -CgAGUUUGAGCUCGAGCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 150893 0.81 0.314902
Target:  5'- cGUUCca---CGAGCUCGGCCGACGCGu -3'
miRNA:   3'- -CGAGuuugaGCUCGAGCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 146003 0.68 0.917909
Target:  5'- gGCUCGgggagcggguccgccGGCUCGAGCgcgGGUCGACGg- -3'
miRNA:   3'- -CGAGU---------------UUGAGCUCGag-CCGGUUGCgc -5'
7679 3' -53.8 NC_001973.1 + 145569 0.73 0.713854
Target:  5'- uGCUCAAGCUgguguccuuguacaCGAGCgCGGCCGugGa- -3'
miRNA:   3'- -CGAGUUUGA--------------GCUCGaGCCGGUugCgc -5'
7679 3' -53.8 NC_001973.1 + 141109 0.7 0.83738
Target:  5'- aUUCGGAC-CGAGCUgaacgcCGGCuCGACGCa -3'
miRNA:   3'- cGAGUUUGaGCUCGA------GCCG-GUUGCGc -5'
7679 3' -53.8 NC_001973.1 + 139891 0.67 0.937041
Target:  5'- aGCUCGAGCgcguggugUCGGuGCUgCGcGCCAuGCGCGc -3'
miRNA:   3'- -CGAGUUUG--------AGCU-CGA-GC-CGGU-UGCGC- -5'
7679 3' -53.8 NC_001973.1 + 138557 0.73 0.706814
Target:  5'- cGCUCGccgucguAUUUGAcUUCGGCCAGCGCGc -3'
miRNA:   3'- -CGAGUu------UGAGCUcGAGCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 138344 0.67 0.946317
Target:  5'- uGCUCcauuuGCUUGAGg-CGGCCgAGCGUGc -3'
miRNA:   3'- -CGAGuu---UGAGCUCgaGCCGG-UUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.