miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 151145 0.84 0.108086
Target:  5'- -gCCGAUGACAUCAUGCCUCGgccgaaagaauggGGCCCu -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGGAGC-------------UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 151195 0.84 0.114009
Target:  5'- -gCCGAUGACAUCAUGCCUCG-GCCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGGAGCuCGGg -5'
7681 5' -57.9 NC_001973.1 + 12167 0.84 0.11993
Target:  5'- aGCCCGAUGAgAUCAUGCCUaaacUGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 12245 0.84 0.122997
Target:  5'- aGCCCGAUGACAUCAUGCCUaaacccAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCGGAgc----UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 72263 0.83 0.12935
Target:  5'- aGCCCGAUGACAUCAUcccuaaCUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGcg----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 127412 0.83 0.12935
Target:  5'- -aCCGAUGACAUCAUGCCuaaacUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 72341 0.83 0.12935
Target:  5'- aGCCCGAUGACAUCAUcccuaaCUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGcg----GAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 130753 0.83 0.12935
Target:  5'- -aCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 2737 0.83 0.136005
Target:  5'- aGCCCGAUGAgAUCACGCCa--AGCCCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGagcUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 129281 0.83 0.139449
Target:  5'- -gCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 124171 0.82 0.154039
Target:  5'- -gCCGACGGaauGUCGCGCCUCGAGCgCg -3'
miRNA:   3'- cgGGCUGCUg--UAGUGCGGAGCUCGgG- -5'
7681 5' -57.9 NC_001973.1 + 129037 0.82 0.161843
Target:  5'- -aCCGAUGACAUCAUGCCUaaacUGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 12324 0.81 0.187423
Target:  5'- aCCCGAUGAgAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- cGGGCUGCUgUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 127568 0.79 0.232437
Target:  5'- -gCCGAUGAgAUCACGCCcaagcUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUgUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 17340 0.78 0.255211
Target:  5'- uCCCGugGGgGUCACGCCgauuucgcggCGAGCCg -3'
miRNA:   3'- cGGGCugCUgUAGUGCGGa---------GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 2855 0.78 0.279784
Target:  5'- aGCCCGAUGAgAUCAUGCUUUGAucacGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGAGCU----CGGG- -5'
7681 5' -57.9 NC_001973.1 + 90218 0.78 0.286214
Target:  5'- cGCUCGACGcGCAcggACGCCUCGuGGCCCa -3'
miRNA:   3'- -CGGGCUGC-UGUag-UGCGGAGC-UCGGG- -5'
7681 5' -57.9 NC_001973.1 + 23739 0.78 0.286214
Target:  5'- gGCCCGACGGCGacCGCGCC-CG-GCCUc -3'
miRNA:   3'- -CGGGCUGCUGUa-GUGCGGaGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 87001 0.77 0.313098
Target:  5'- cGCCCGACGACGacgaCGCGCUcCGcccGCCCg -3'
miRNA:   3'- -CGGGCUGCUGUa---GUGCGGaGCu--CGGG- -5'
7681 5' -57.9 NC_001973.1 + 25367 0.77 0.320111
Target:  5'- gGCUCGACGGCAUCAacccCGaCCUCaaGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGU----GC-GGAG--CUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.