miRNA display CGI


Results 1 - 20 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 160776 0.86 0.081729
Target:  5'- -aCCGAUGACAUCACGCCcaagcUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 160677 0.76 0.349332
Target:  5'- -gCCGAUGAgAUCAUGCCuuaacUCGAGCUCg -3'
miRNA:   3'- cgGGCUGCUgUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 160597 0.92 0.034421
Target:  5'- aGCCCGAUGACAUCAUGCCcaaacUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUGUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 160519 0.87 0.075626
Target:  5'- aGCCCGAUGAgAUCACGCCUaaacUGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 160442 0.86 0.0883
Target:  5'- aCCCGAUGACAUCAUGCCUaaacUGAGCUCg -3'
miRNA:   3'- cGGGCUGCUGUAGUGCGGA----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 160362 0.88 0.059832
Target:  5'- aGCCCGAUGAgAUCACGCCcaagcUCGAGCUCg -3'
miRNA:   3'- -CGGGCUGCUgUAGUGCGG-----AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 159422 0.76 0.33963
Target:  5'- -aUCGACGuACGUCaaguugcaaaagaaACGCCUCGAGUCCg -3'
miRNA:   3'- cgGGCUGC-UGUAG--------------UGCGGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 159199 0.72 0.549214
Target:  5'- cGCUCGACGAguUgCAaGCCagggcgaUCGAGCCCg -3'
miRNA:   3'- -CGGGCUGCUguA-GUgCGG-------AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 158828 0.67 0.833644
Target:  5'- -gCCGGCGGCcgagCGCGCggaCGAGCCg -3'
miRNA:   3'- cgGGCUGCUGua--GUGCGga-GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 158766 0.68 0.782544
Target:  5'- cGCgCGcCGACcuaCACGCC-CGAcGCCCu -3'
miRNA:   3'- -CGgGCuGCUGua-GUGCGGaGCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 158687 0.72 0.569656
Target:  5'- -gCCGGCGGCcgagcgCGCGCCUacCGAcGCCCu -3'
miRNA:   3'- cgGGCUGCUGua----GUGCGGA--GCU-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 158642 0.68 0.800168
Target:  5'- cGCCCGACGACccguUCGgCGagaUCGGGCa- -3'
miRNA:   3'- -CGGGCUGCUGu---AGU-GCgg-AGCUCGgg -5'
7681 5' -57.9 NC_001973.1 + 158470 0.73 0.502505
Target:  5'- aGUCCGAuCGGCucgucCGCGCC-CGAGCCg -3'
miRNA:   3'- -CGGGCU-GCUGua---GUGCGGaGCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 158378 0.73 0.501569
Target:  5'- cGCCCGcgcCGACucguccgAUCGCGCC-CGcGCCCg -3'
miRNA:   3'- -CGGGCu--GCUG-------UAGUGCGGaGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 158301 0.69 0.701814
Target:  5'- -gCCGAuuuuccaaaaaaguuCGACGUcCGCGCC-CGAGCCg -3'
miRNA:   3'- cgGGCU---------------GCUGUA-GUGCGGaGCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 158198 0.72 0.559896
Target:  5'- -aCCGGCGGCAccuggUCGCGUCUCGAGaCg -3'
miRNA:   3'- cgGGCUGCUGU-----AGUGCGGAGCUCgGg -5'
7681 5' -57.9 NC_001973.1 + 157203 0.67 0.841601
Target:  5'- uGCCgGugGAUAUuucguagagcagCACGCCcaCG-GCCCa -3'
miRNA:   3'- -CGGgCugCUGUA------------GUGCGGa-GCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 156336 0.68 0.773537
Target:  5'- uCUgGACGACAUUuuaacuUGCCUCGGaCCCg -3'
miRNA:   3'- cGGgCUGCUGUAGu-----GCGGAGCUcGGG- -5'
7681 5' -57.9 NC_001973.1 + 155912 0.71 0.59916
Target:  5'- uGCCCGGCGAUuacgaaCACaagGCCUCGucGUCCa -3'
miRNA:   3'- -CGGGCUGCUGua----GUG---CGGAGCu-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 155463 0.73 0.483936
Target:  5'- aGCCCGGUGAg--CcCGCuCUCGAGCCCg -3'
miRNA:   3'- -CGGGCUGCUguaGuGCG-GAGCUCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.