Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7697 | 3' | -55.6 | NC_001973.1 | + | 41023 | 1.05 | 0.006505 |
Target: 5'- uACGCGUCCGCCGAGCUCAGUUUGGGg -3' miRNA: 3'- -UGCGCAGGCGGCUCGAGUCAAAUCCg -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 40944 | 1.05 | 0.006328 |
Target: 5'- uACGCGUCCGCCGAGCUCgAGUUUAGGCa -3' miRNA: 3'- -UGCGCAGGCGGCUCGAG-UCAAAUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 40866 | 1.05 | 0.006328 |
Target: 5'- uACGCGUCCGCCGAGCUCgAGUUUAGGCa -3' miRNA: 3'- -UGCGCAGGCGGCUCGAG-UCAAAUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 114992 | 1.04 | 0.006875 |
Target: 5'- uACGCGUCCGCCGAGCUCgAGUUUGGGCa -3' miRNA: 3'- -UGCGCAGGCGGCUCGAG-UCAAAUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 114836 | 1.04 | 0.006875 |
Target: 5'- uACGCGUCCGCCGAGCUCgAGUUUGGGCa -3' miRNA: 3'- -UGCGCAGGCGGCUCGAG-UCAAAUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 114760 | 0.99 | 0.015742 |
Target: 5'- uACGCGUCCG-CGAGCUCAGUUUAGGCg -3' miRNA: 3'- -UGCGCAGGCgGCUCGAGUCAAAUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 114604 | 0.98 | 0.018569 |
Target: 5'- uACGCGUCCGCCGAGCUCAaGUUaAGGCa -3' miRNA: 3'- -UGCGCAGGCGGCUCGAGU-CAAaUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 114682 | 0.97 | 0.021897 |
Target: 5'- uACGCGcCCGCCGAGCUCgAGUUUGGGCg -3' miRNA: 3'- -UGCGCaGGCGGCUCGAG-UCAAAUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 114914 | 0.93 | 0.037843 |
Target: 5'- uACGCGUCCaCCGAGCUCgAGUUUGGGCa -3' miRNA: 3'- -UGCGCAGGcGGCUCGAG-UCAAAUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 41102 | 0.91 | 0.049647 |
Target: 5'- uACGCGUCCGCCGAGCUCgAGUUUGGuCa -3' miRNA: 3'- -UGCGCAGGCGGCUCGAG-UCAAAUCcG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 150925 | 0.8 | 0.253788 |
Target: 5'- uACGCGUCCGCCGGGgUC-GUUggAGGUc -3' miRNA: 3'- -UGCGCAGGCGGCUCgAGuCAAa-UCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 21280 | 0.79 | 0.285618 |
Target: 5'- -gGCGUCCGCCGGGCcgucgcUCAGUcgucGGGCu -3' miRNA: 3'- ugCGCAGGCGGCUCG------AGUCAaa--UCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 115052 | 0.75 | 0.456241 |
Target: 5'- -gGCGUCCGCCGAGCUCGagcaaacccgauuccGgccucGGCg -3' miRNA: 3'- ugCGCAGGCGGCUCGAGU---------------Caaau-CCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 4861 | 0.73 | 0.598982 |
Target: 5'- gGCGCGacguuUCCGCCGuGCUCGuacaaGGGCa -3' miRNA: 3'- -UGCGC-----AGGCGGCuCGAGUcaaa-UCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 95744 | 0.73 | 0.568604 |
Target: 5'- gGCGCGcCCGCCGAcaagaucguGCUCGGcgu-GGCc -3' miRNA: 3'- -UGCGCaGGCGGCU---------CGAGUCaaauCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 151092 | 0.73 | 0.578694 |
Target: 5'- uACGCGcCCGCCGGGgUC-GUUUgAGGUu -3' miRNA: 3'- -UGCGCaGGCGGCUCgAGuCAAA-UCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 5434 | 0.73 | 0.558558 |
Target: 5'- uCGCGUCCaaggaGCCGAGCUCGGgca--GCa -3' miRNA: 3'- uGCGCAGG-----CGGCUCGAGUCaaaucCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 80788 | 0.72 | 0.63979 |
Target: 5'- gACGCGcauUUCGCUGAGCgucuucaaCAGUUUGGGg -3' miRNA: 3'- -UGCGC---AGGCGGCUCGa-------GUCAAAUCCg -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 7103 | 0.72 | 0.629577 |
Target: 5'- cGCGCGaCCGCCGucguGCUCgAGUgc-GGCc -3' miRNA: 3'- -UGCGCaGGCGGCu---CGAG-UCAaauCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 146012 | 0.71 | 0.687572 |
Target: 5'- aGCGgGUCCGCCG-GCUCgagcgcgggucgacGGacgGGGCg -3' miRNA: 3'- -UGCgCAGGCGGCuCGAG--------------UCaaaUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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