Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7697 | 3' | -55.6 | NC_001973.1 | + | 40866 | 1.05 | 0.006328 |
Target: 5'- uACGCGUCCGCCGAGCUCgAGUUUAGGCa -3' miRNA: 3'- -UGCGCAGGCGGCUCGAG-UCAAAUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 105938 | 0.66 | 0.910585 |
Target: 5'- --uCGUCCGCguCGAGCUUcuucaGGUgcacgUAGGCg -3' miRNA: 3'- ugcGCAGGCG--GCUCGAG-----UCAa----AUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 128311 | 0.67 | 0.904474 |
Target: 5'- gACGCcaaCUGCUGAuuuuGCUCGGUUUuGGCc -3' miRNA: 3'- -UGCGca-GGCGGCU----CGAGUCAAAuCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 51656 | 0.67 | 0.891556 |
Target: 5'- -gGCGaCCGCCGAGgaCGcGg--AGGCg -3' miRNA: 3'- ugCGCaGGCGGCUCgaGU-CaaaUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 109180 | 0.67 | 0.884755 |
Target: 5'- cGCGCGcUCGCCGAGCgcgccgcgCAGcc--GGCc -3' miRNA: 3'- -UGCGCaGGCGGCUCGa-------GUCaaauCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 136584 | 0.67 | 0.884755 |
Target: 5'- uGCGCGcCgGCgCGAcGCUCAGcucgUcGGGCg -3' miRNA: 3'- -UGCGCaGgCG-GCU-CGAGUCa---AaUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 7851 | 0.67 | 0.884755 |
Target: 5'- cCGCGcCCGUCGAGCUgGcgcgccaGGGCg -3' miRNA: 3'- uGCGCaGGCGGCUCGAgUcaaa---UCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 12138 | 0.67 | 0.87049 |
Target: 5'- uACGCGUCUGCCGGGgUCAa------- -3' miRNA: 3'- -UGCGCAGGCGGCUCgAGUcaaauccg -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 158712 | 0.68 | 0.863035 |
Target: 5'- gACGCccuGUUCGCCGAGaUCAGgcgAGGa -3' miRNA: 3'- -UGCG---CAGGCGGCUCgAGUCaaaUCCg -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 158787 | 0.66 | 0.910585 |
Target: 5'- gACGCccuGUUCGCCGAGaUCAGacaggGGGUc -3' miRNA: 3'- -UGCG---CAGGCGGCUCgAGUCaaa--UCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 126571 | 0.66 | 0.915305 |
Target: 5'- cGCGgGUCCG-CGGGCUUGGcgaucacguccUGGGCg -3' miRNA: 3'- -UGCgCAGGCgGCUCGAGUCaa---------AUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 19714 | 0.66 | 0.916461 |
Target: 5'- uACGCGUCgGCCGgAGCUC----UAGaGUa -3' miRNA: 3'- -UGCGCAGgCGGC-UCGAGucaaAUC-CG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 30348 | 0.66 | 0.937588 |
Target: 5'- uCGCG-CagGCCGAGUUCGGgccgccGGCg -3' miRNA: 3'- uGCGCaGg-CGGCUCGAGUCaaau--CCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 121666 | 0.66 | 0.934662 |
Target: 5'- gGCGCGUCgcucgcggCGCCcggauaccgguacgcGAGCUCGGcggcGGCg -3' miRNA: 3'- -UGCGCAG--------GCGG---------------CUCGAGUCaaauCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 146799 | 0.66 | 0.932663 |
Target: 5'- cACGCcuuccaccCCGCCGGGCgugCGGgugUUAGuGCu -3' miRNA: 3'- -UGCGca------GGCGGCUCGa--GUCa--AAUC-CG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 11257 | 0.66 | 0.932663 |
Target: 5'- aACGCGUacugguccCCGCCGAGCgcgCAcac--GGCc -3' miRNA: 3'- -UGCGCA--------GGCGGCUCGa--GUcaaauCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 56516 | 0.66 | 0.9275 |
Target: 5'- gGCGgGcUCggCGCCaAGCUCGGgcgGGGCg -3' miRNA: 3'- -UGCgC-AG--GCGGcUCGAGUCaaaUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 56462 | 0.66 | 0.9275 |
Target: 5'- gGCGgGcUCggCGCCaAGCUCGGgcgGGGCg -3' miRNA: 3'- -UGCgC-AG--GCGGcUCGAGUCaaaUCCG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 123517 | 0.66 | 0.9221 |
Target: 5'- gGCGCGcUCGCCG-GCgCAGUgcAGcGCg -3' miRNA: 3'- -UGCGCaGGCGGCuCGaGUCAaaUC-CG- -5' |
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7697 | 3' | -55.6 | NC_001973.1 | + | 26270 | 0.66 | 0.916461 |
Target: 5'- -aGCGUCCGCuuccaaCGAGCUCucc---GGCu -3' miRNA: 3'- ugCGCAGGCG------GCUCGAGucaaauCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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