miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
770 3' -43.8 NC_000852.3 + 753 0.66 1
Target:  5'- ---cGugAUGCGGC-AGAUGACAC-Cg -3'
miRNA:   3'- uuuaCugUGUGCUGuUUUACUGUGuG- -5'
770 3' -43.8 NC_000852.3 + 67919 0.67 1
Target:  5'- -uGUGGCAgAUGGaaaauuuauggucuuCAGGGUGAUACACg -3'
miRNA:   3'- uuUACUGUgUGCU---------------GUUUUACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 329991 0.66 1
Target:  5'- ---cGugAUGCGGC-AGAUGACAC-Cg -3'
miRNA:   3'- uuuaCugUGUGCUGuUUUACUGUGuG- -5'
770 3' -43.8 NC_000852.3 + 28168 0.69 1
Target:  5'- --uUGGuauUACAUGACGAAAUGACAuCAUu -3'
miRNA:   3'- uuuACU---GUGUGCUGUUUUACUGU-GUG- -5'
770 3' -43.8 NC_000852.3 + 327783 0.67 1
Target:  5'- gAAGUGACcuGCAcuCGGCGu--UGACACAUa -3'
miRNA:   3'- -UUUACUG--UGU--GCUGUuuuACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 124670 0.68 1
Target:  5'- -cGUGACACGCGACccacuGAAGUGAaagAUGCc -3'
miRNA:   3'- uuUACUGUGUGCUG-----UUUUACUg--UGUG- -5'
770 3' -43.8 NC_000852.3 + 251127 0.69 1
Target:  5'- cAGUGACACGCG------UGAUACACg -3'
miRNA:   3'- uUUACUGUGUGCuguuuuACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 4741 0.68 1
Target:  5'- -uAUGAUAUuucgAUGACAAA-UGACACAUa -3'
miRNA:   3'- uuUACUGUG----UGCUGUUUuACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 234678 0.68 1
Target:  5'- cAAAUGACAaacaaAUGACAAuuaAAUGACAaACa -3'
miRNA:   3'- -UUUACUGUg----UGCUGUU---UUACUGUgUG- -5'
770 3' -43.8 NC_000852.3 + 95647 0.67 1
Target:  5'- ---cGGCauACGCGGCGAAG-GACACGg -3'
miRNA:   3'- uuuaCUG--UGUGCUGUUUUaCUGUGUg -5'
770 3' -43.8 NC_000852.3 + 26617 0.69 1
Target:  5'- uGGAUGaACACACGACcgc--GACGCAa -3'
miRNA:   3'- -UUUAC-UGUGUGCUGuuuuaCUGUGUg -5'
770 3' -43.8 NC_000852.3 + 242678 0.69 1
Target:  5'- aGAAUGcACGCACGAauaCGAAA-GACAUAUa -3'
miRNA:   3'- -UUUAC-UGUGUGCU---GUUUUaCUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 326435 0.66 1
Target:  5'- --uUGACACcuGgGGCAAuaAAUGGCACGg -3'
miRNA:   3'- uuuACUGUG--UgCUGUU--UUACUGUGUg -5'
770 3' -43.8 NC_000852.3 + 172749 0.66 1
Target:  5'- uGAUGAUucccaucgcgaauucCGCGACGAuuUGAUGCGCg -3'
miRNA:   3'- uUUACUGu--------------GUGCUGUUuuACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 267193 0.66 1
Target:  5'- ---gGACACuaucuACGACGcAAUGAaaCACGCa -3'
miRNA:   3'- uuuaCUGUG-----UGCUGUuUUACU--GUGUG- -5'
770 3' -43.8 NC_000852.3 + 170595 0.66 1
Target:  5'- gGAAUGACAaAUGACA-AAUGACAa-- -3'
miRNA:   3'- -UUUACUGUgUGCUGUuUUACUGUgug -5'
770 3' -43.8 NC_000852.3 + 157144 0.66 1
Target:  5'- aAAAUGACAaAUGACAAauaAAUGACAa-- -3'
miRNA:   3'- -UUUACUGUgUGCUGUU---UUACUGUgug -5'
770 3' -43.8 NC_000852.3 + 141968 0.67 1
Target:  5'- gAAAUGaAUAUAuCGACAAAAUGAUGCu- -3'
miRNA:   3'- -UUUAC-UGUGU-GCUGUUUUACUGUGug -5'
770 3' -43.8 NC_000852.3 + 196068 0.67 1
Target:  5'- ---cGAUAC-CGACGuaaucuUGGCACGCa -3'
miRNA:   3'- uuuaCUGUGuGCUGUuuu---ACUGUGUG- -5'
770 3' -43.8 NC_000852.3 + 51125 0.68 1
Target:  5'- cAAAUGACAaAUGACA-AAUGACAaACa -3'
miRNA:   3'- -UUUACUGUgUGCUGUuUUACUGUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.