Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7722 | 3' | -56.4 | NC_001973.1 | + | 147061 | 0.66 | 0.910563 |
Target: 5'- cGGUUCGUGCcgaucuggCGCGUGGAggGCgCGCu -3' miRNA: 3'- -UCAGGCACGaa------GCGCGCUU--UGgGCGu -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 45553 | 0.66 | 0.910563 |
Target: 5'- aGGUUCGUGUUgaaguugaCGCGCGGcaaCCGCu -3' miRNA: 3'- -UCAGGCACGAa-------GCGCGCUuugGGCGu -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 133998 | 0.66 | 0.910563 |
Target: 5'- uGG-CCGUGC-UCGCGUccacGguGCCCGUc -3' miRNA: 3'- -UCaGGCACGaAGCGCG----CuuUGGGCGu -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 10270 | 0.66 | 0.904478 |
Target: 5'- gAGUUugCGUcGCgucgUCGaacgcggaCGCGAAGCCCGCGu -3' miRNA: 3'- -UCAG--GCA-CGa---AGC--------GCGCUUUGGGCGU- -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 101991 | 0.66 | 0.904478 |
Target: 5'- uGUCCGUGUgcucgUUGCGCGccuccGACUCgGCGu -3' miRNA: 3'- uCAGGCACGa----AGCGCGCu----UUGGG-CGU- -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 7964 | 0.66 | 0.902607 |
Target: 5'- ---gCGUGCgcguaCGCGCGAuugugcgcgcguacGACCCGCc -3' miRNA: 3'- ucagGCACGaa---GCGCGCU--------------UUGGGCGu -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 120738 | 0.66 | 0.898161 |
Target: 5'- gAGgCCGUGUggCGCGCGcAGCCgccgacguguucCGCAa -3' miRNA: 3'- -UCaGGCACGaaGCGCGCuUUGG------------GCGU- -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 70097 | 0.66 | 0.898161 |
Target: 5'- --gUUGUGCgcgaGCGCGAAcgccucggcGCCCGCGg -3' miRNA: 3'- ucaGGCACGaag-CGCGCUU---------UGGGCGU- -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 134989 | 0.66 | 0.891616 |
Target: 5'- cGUCCGgGCcgUCGgGCGGGAgCCGg- -3' miRNA: 3'- uCAGGCaCGa-AGCgCGCUUUgGGCgu -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 535 | 0.67 | 0.87065 |
Target: 5'- -cUCCGUGCgccaaUUCGCGa-AAACUCGCGu -3' miRNA: 3'- ucAGGCACG-----AAGCGCgcUUUGGGCGU- -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 46154 | 0.67 | 0.866224 |
Target: 5'- cGcCUGUGCUgggacggacugguguUCGCGCc--GCCCGCGg -3' miRNA: 3'- uCaGGCACGA---------------AGCGCGcuuUGGGCGU- -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 51792 | 0.67 | 0.858681 |
Target: 5'- gAGUUCGaauaccugaagaacaUGCU--GCGCGAGgcGCCCGCGu -3' miRNA: 3'- -UCAGGC---------------ACGAagCGCGCUU--UGGGCGU- -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 7314 | 0.67 | 0.855607 |
Target: 5'- uGUCgGUGaa-CGUGCGcgGCCCGCc -3' miRNA: 3'- uCAGgCACgaaGCGCGCuuUGGGCGu -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 114421 | 0.68 | 0.831564 |
Target: 5'- cGGUCgCGaGCcugCGCGCGAGccgGCUCGCGa -3' miRNA: 3'- -UCAG-GCaCGaa-GCGCGCUU---UGGGCGU- -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 138761 | 0.68 | 0.823182 |
Target: 5'- cGUCCGUGCaccCGgcCGCGAAcuGCCCGa- -3' miRNA: 3'- uCAGGCACGaa-GC--GCGCUU--UGGGCgu -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 129660 | 0.68 | 0.823182 |
Target: 5'- cGGUggUCGUGU--CGaaaGCGAAGCCCGCGc -3' miRNA: 3'- -UCA--GGCACGaaGCg--CGCUUUGGGCGU- -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 66805 | 0.68 | 0.800606 |
Target: 5'- ---aCGUGCUgCGCGCGcaguucgucuugggcAAGCCCGCc -3' miRNA: 3'- ucagGCACGAaGCGCGC---------------UUUGGGCGu -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 128158 | 0.68 | 0.787109 |
Target: 5'- gGGUCCGaggGCUUggugaucacauccUGCGCGAugUCCGCc -3' miRNA: 3'- -UCAGGCa--CGAA-------------GCGCGCUuuGGGCGu -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 8783 | 0.69 | 0.769572 |
Target: 5'- gAGgCCGaGCgucaaCGCGaCGGAACCCGCGg -3' miRNA: 3'- -UCaGGCaCGaa---GCGC-GCUUUGGGCGU- -5' |
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7722 | 3' | -56.4 | NC_001973.1 | + | 34683 | 0.69 | 0.760163 |
Target: 5'- uGUCCGUGCUcuugaacgcggUCGCGUGccacGCCaGCAg -3' miRNA: 3'- uCAGGCACGA-----------AGCGCGCuu--UGGgCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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