miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 82315 0.73 0.245999
Target:  5'- aGGUGGCGcuGGCGUGCGUG-CCGUAGc -3'
miRNA:   3'- -CCGCCGCcuUCGCGCGCGCgGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 137323 0.73 0.251714
Target:  5'- aGGCgGGCGGgcGCGCGCGCGacgaCGa-- -3'
miRNA:   3'- -CCG-CCGCCuuCGCGCGCGCgg--GCauu -5'
7728 3' -62.9 NC_001973.1 + 84255 0.73 0.257538
Target:  5'- cGCGGCGGAGGUGCuCGCGCUg---- -3'
miRNA:   3'- cCGCCGCCUUCGCGcGCGCGGgcauu -5'
7728 3' -62.9 NC_001973.1 + 101967 0.72 0.275673
Target:  5'- uGGCGGCGacGAuGCGCGCcagcGUGUCCGUGu -3'
miRNA:   3'- -CCGCCGC--CUuCGCGCG----CGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 122605 0.72 0.275673
Target:  5'- uGCGGCGGAGGCGUcgGCGgCGCCg---- -3'
miRNA:   3'- cCGCCGCCUUCGCG--CGC-GCGGgcauu -5'
7728 3' -62.9 NC_001973.1 + 42937 0.72 0.281941
Target:  5'- cGUGGCGGAGGagaaGCGCGCUCGUc- -3'
miRNA:   3'- cCGCCGCCUUCgcg-CGCGCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 61681 0.72 0.288321
Target:  5'- cGCGGCGcGAAGCGgcgucgGCGCGCUCGa-- -3'
miRNA:   3'- cCGCCGC-CUUCGCg-----CGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 98343 0.72 0.288321
Target:  5'- aGCGGCGGcGGCGCGCGUucGgCCGc-- -3'
miRNA:   3'- cCGCCGCCuUCGCGCGCG--CgGGCauu -5'
7728 3' -62.9 NC_001973.1 + 61018 0.72 0.294815
Target:  5'- -cCGGCGGAGGCGCGCGaCGCaggaGUu- -3'
miRNA:   3'- ccGCCGCCUUCGCGCGC-GCGgg--CAuu -5'
7728 3' -62.9 NC_001973.1 + 144741 0.72 0.308141
Target:  5'- cGGCGGCGGAGGCG-GCcgaggaggcgGCGCgCGa-- -3'
miRNA:   3'- -CCGCCGCCUUCGCgCG----------CGCGgGCauu -5'
7728 3' -62.9 NC_001973.1 + 7262 0.72 0.308141
Target:  5'- cGCaGCGGGcucGGCGCgcgGCGCGCCCGc-- -3'
miRNA:   3'- cCGcCGCCU---UCGCG---CGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 123107 0.71 0.314976
Target:  5'- aGCGGCaGGuugucGGCGCGCGCGaUCCGg-- -3'
miRNA:   3'- cCGCCG-CCu----UCGCGCGCGC-GGGCauu -5'
7728 3' -62.9 NC_001973.1 + 137274 0.71 0.321924
Target:  5'- cGGCGGCGGGgcucGGcCGCGCGCGUUUu--- -3'
miRNA:   3'- -CCGCCGCCU----UC-GCGCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 27872 0.71 0.321924
Target:  5'- cGGCcGCGGgcGCGgGCGCGCUCu--- -3'
miRNA:   3'- -CCGcCGCCuuCGCgCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 50088 0.71 0.336161
Target:  5'- gGGCGGCGGcgccacggaGGGCgGCgGCGCcGCCgCGUAAa -3'
miRNA:   3'- -CCGCCGCC---------UUCG-CG-CGCG-CGG-GCAUU- -5'
7728 3' -62.9 NC_001973.1 + 83087 0.71 0.34345
Target:  5'- aGCGGCGGcGGCGcCGuCGCGCUCa--- -3'
miRNA:   3'- cCGCCGCCuUCGC-GC-GCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 55830 0.7 0.358367
Target:  5'- aGGCcuGCGGAccGGCGagggcgaGCGCGCCCGc-- -3'
miRNA:   3'- -CCGc-CGCCU--UCGCg------CGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 101214 0.7 0.358367
Target:  5'- gGGCGGCgcuucuGGucGCGCcacaGCGCGCCCa--- -3'
miRNA:   3'- -CCGCCG------CCuuCGCG----CGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 23571 0.7 0.373732
Target:  5'- cGGcCGGCGGA--CGCGC-CGCCCGc-- -3'
miRNA:   3'- -CC-GCCGCCUucGCGCGcGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 10050 0.7 0.381581
Target:  5'- uGGUGGCGcacGUGcCGCagGCGCCCGUGAa -3'
miRNA:   3'- -CCGCCGCcuuCGC-GCG--CGCGGGCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.