miRNA display CGI


Results 1 - 20 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 158830 0.69 0.447296
Target:  5'- cGGCGGCcG-AGCGCGCGgacgagcCGCCCa--- -3'
miRNA:   3'- -CCGCCGcCuUCGCGCGC-------GCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 158754 0.67 0.539579
Target:  5'- -cCGGCGaccGAGCGCGCGCcgaccuacacGCCCGa-- -3'
miRNA:   3'- ccGCCGCc--UUCGCGCGCG----------CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 158689 0.69 0.414052
Target:  5'- cGGCGGCcG-AGCGCGCGCcuaccgacGCCCu--- -3'
miRNA:   3'- -CCGCCGcCuUCGCGCGCG--------CGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 157883 0.67 0.538629
Target:  5'- uGCGGCucgugucGGAGGuCGCGgccgcCGCGCCCGcGAg -3'
miRNA:   3'- cCGCCG-------CCUUC-GCGC-----GCGCGGGCaUU- -5'
7728 3' -62.9 NC_001973.1 + 157735 0.66 0.577961
Target:  5'- --aGGUGGAgcgcGGUGCGCGCGCUgcacucuuUGUGAa -3'
miRNA:   3'- ccgCCGCCU----UCGCGCGCGCGG--------GCAUU- -5'
7728 3' -62.9 NC_001973.1 + 152337 0.68 0.456939
Target:  5'- cGGUGcGCGGGcggGGCGCGauaGCGCCgCGcGAa -3'
miRNA:   3'- -CCGC-CGCCU---UCGCGCg--CGCGG-GCaUU- -5'
7728 3' -62.9 NC_001973.1 + 145034 0.68 0.483785
Target:  5'- uGCGGCGcGAGCGCGUcgaGCGCCg---- -3'
miRNA:   3'- cCGCCGCcUUCGCGCG---CGCGGgcauu -5'
7728 3' -62.9 NC_001973.1 + 144741 0.72 0.308141
Target:  5'- cGGCGGCGGAGGCG-GCcgaggaggcgGCGCgCGa-- -3'
miRNA:   3'- -CCGCCGCCUUCGCgCG----------CGCGgGCauu -5'
7728 3' -62.9 NC_001973.1 + 144160 0.66 0.597387
Target:  5'- aGCcGCaGGAcuacgAGCGCGCGCGCgCGg-- -3'
miRNA:   3'- cCGcCG-CCU-----UCGCGCGCGCGgGCauu -5'
7728 3' -62.9 NC_001973.1 + 140889 0.66 0.607138
Target:  5'- cGCGGCGuc-GCGCGCGacccaGCCCu--- -3'
miRNA:   3'- cCGCCGCcuuCGCGCGCg----CGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 140032 0.7 0.389538
Target:  5'- cGGUGGCGGGcuGCGCccGgGCGCUCGa-- -3'
miRNA:   3'- -CCGCCGCCUu-CGCG--CgCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 138439 0.67 0.539579
Target:  5'- cGCGcGCGGAaaGGCGCGCGUcagaugcuCCCGa-- -3'
miRNA:   3'- cCGC-CGCCU--UCGCGCGCGc-------GGGCauu -5'
7728 3' -62.9 NC_001973.1 + 137323 0.73 0.251714
Target:  5'- aGGCgGGCGGgcGCGCGCGCGacgaCGa-- -3'
miRNA:   3'- -CCG-CCGCCuuCGCGCGCGCgg--GCauu -5'
7728 3' -62.9 NC_001973.1 + 137274 0.71 0.321924
Target:  5'- cGGCGGCGGGgcucGGcCGCGCGCGUUUu--- -3'
miRNA:   3'- -CCGCCGCCU----UC-GCGCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 137201 0.69 0.448168
Target:  5'- cGCGGCGcGAGucGCGCggcgGCGCGUCCGc-- -3'
miRNA:   3'- cCGCCGC-CUU--CGCG----CGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 135935 0.66 0.577961
Target:  5'- cGCGGCGauGGCGCGCcaaguGCGCCaaGUGg -3'
miRNA:   3'- cCGCCGCcuUCGCGCG-----CGCGGg-CAUu -5'
7728 3' -62.9 NC_001973.1 + 135863 0.69 0.422431
Target:  5'- aGGUGuGCGucGGGUGCGUGUGCCCGa-- -3'
miRNA:   3'- -CCGC-CGCc-UUCGCGCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 132548 0.77 0.145555
Target:  5'- cGGCGGCGGGcucgAGCGCggcggugugGCGCGCCgUGUAu -3'
miRNA:   3'- -CCGCCGCCU----UCGCG---------CGCGCGG-GCAUu -5'
7728 3' -62.9 NC_001973.1 + 132441 0.7 0.396792
Target:  5'- cGUGGUGGAGGCGCcggcgggGCGCgGCCuCGUc- -3'
miRNA:   3'- cCGCCGCCUUCGCG-------CGCG-CGG-GCAuu -5'
7728 3' -62.9 NC_001973.1 + 131490 0.69 0.439492
Target:  5'- aGGuCGGCGGGccCGcCGCGCGCCgGa-- -3'
miRNA:   3'- -CC-GCCGCCUucGC-GCGCGCGGgCauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.