miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
774 3' -48.2 NC_000852.3 + 222579 0.66 0.999995
Target:  5'- -gGAACUCACUCau-CGGUGGAAGu- -3'
miRNA:   3'- ugUUUGGGUGAGauuGUCGCCUUUgg -5'
774 3' -48.2 NC_000852.3 + 150797 0.66 0.999993
Target:  5'- ----cCCUACUUUGGCAGCGGcGAg- -3'
miRNA:   3'- uguuuGGGUGAGAUUGUCGCCuUUgg -5'
774 3' -48.2 NC_000852.3 + 328999 0.66 0.999993
Target:  5'- -gGAGCCCAUguUCgaccAGgAGCGGAGcCCa -3'
miRNA:   3'- ugUUUGGGUG--AGa---UUgUCGCCUUuGG- -5'
774 3' -48.2 NC_000852.3 + 1745 0.66 0.999993
Target:  5'- -gGAGCCCAUguUCgaccAGgAGCGGAGcCCa -3'
miRNA:   3'- ugUUUGGGUG--AGa---UUgUCGCCUUuGG- -5'
774 3' -48.2 NC_000852.3 + 328949 0.66 0.999986
Target:  5'- gACAAGCCC-Cg-UAGCguAGCGGAGugUa -3'
miRNA:   3'- -UGUUUGGGuGagAUUG--UCGCCUUugG- -5'
774 3' -48.2 NC_000852.3 + 1795 0.66 0.999986
Target:  5'- gACAAGCCC-Cg-UAGCguAGCGGAGugUa -3'
miRNA:   3'- -UGUUUGGGuGagAUUG--UCGCCUUugG- -5'
774 3' -48.2 NC_000852.3 + 223449 0.67 0.999981
Target:  5'- uGCAGACCCAUUCUcaaAGCuauGGAAGa- -3'
miRNA:   3'- -UGUUUGGGUGAGAuugUCG---CCUUUgg -5'
774 3' -48.2 NC_000852.3 + 87178 0.67 0.999979
Target:  5'- cGCuGACgUAUUCgucauucggaguaauACGGCGGGAACCg -3'
miRNA:   3'- -UGuUUGgGUGAGau-------------UGUCGCCUUUGG- -5'
774 3' -48.2 NC_000852.3 + 33951 0.67 0.999975
Target:  5'- gACGAuuauuaCCACUgggaagGGCAGCGGAaggcGACCa -3'
miRNA:   3'- -UGUUug----GGUGAga----UUGUCGCCU----UUGG- -5'
774 3' -48.2 NC_000852.3 + 119901 0.67 0.999975
Target:  5'- uCGAACCCGCgacgacCAGCGcGAccAGCCa -3'
miRNA:   3'- uGUUUGGGUGagauu-GUCGC-CU--UUGG- -5'
774 3' -48.2 NC_000852.3 + 55488 0.67 0.999966
Target:  5'- -gGAAUCCAUUCUuuguaucgaagAAUGGCGGGAuCCu -3'
miRNA:   3'- ugUUUGGGUGAGA-----------UUGUCGCCUUuGG- -5'
774 3' -48.2 NC_000852.3 + 211109 0.67 0.999966
Target:  5'- gGCGAAgUUGgUgUAACGGCGGuAAACCg -3'
miRNA:   3'- -UGUUUgGGUgAgAUUGUCGCC-UUUGG- -5'
774 3' -48.2 NC_000852.3 + 320076 0.67 0.999955
Target:  5'- gGCAAGCCCGCg--GACgaguAGCGGGGu-- -3'
miRNA:   3'- -UGUUUGGGUGagaUUG----UCGCCUUugg -5'
774 3' -48.2 NC_000852.3 + 197241 0.67 0.999947
Target:  5'- -gAAACCCGCUCcGAaaccugcgccgacgcCAGCGccGAAACCc -3'
miRNA:   3'- ugUUUGGGUGAGaUU---------------GUCGC--CUUUGG- -5'
774 3' -48.2 NC_000852.3 + 168545 0.67 0.999941
Target:  5'- cACAAACCa--UCUGGCcacaccauAGCGGGAccGCCc -3'
miRNA:   3'- -UGUUUGGgugAGAUUG--------UCGCCUU--UGG- -5'
774 3' -48.2 NC_000852.3 + 302494 0.67 0.999941
Target:  5'- uACAAugguuggaCUGCUC--GCAGUGGAGACCc -3'
miRNA:   3'- -UGUUug------GGUGAGauUGUCGCCUUUGG- -5'
774 3' -48.2 NC_000852.3 + 303997 0.68 0.999923
Target:  5'- ---uGCCCAguugUCUAaacAUGGCGGAGGCCu -3'
miRNA:   3'- uguuUGGGUg---AGAU---UGUCGCCUUUGG- -5'
774 3' -48.2 NC_000852.3 + 39625 0.68 0.999923
Target:  5'- -aAAACCaCGCUCUGAUAuuCGGuAGCCg -3'
miRNA:   3'- ugUUUGG-GUGAGAUUGUc-GCCuUUGG- -5'
774 3' -48.2 NC_000852.3 + 194997 0.68 0.999923
Target:  5'- -gGAACCCAUguauuCAGUGGGGACa -3'
miRNA:   3'- ugUUUGGGUGagauuGUCGCCUUUGg -5'
774 3' -48.2 NC_000852.3 + 50419 0.68 0.9999
Target:  5'- uCAAACCCAgccuuuggUUCaAACGGCGGAggUUc -3'
miRNA:   3'- uGUUUGGGU--------GAGaUUGUCGCCUuuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.