miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7749 5' -51.8 NC_001973.1 + 10480 0.67 0.981029
Target:  5'- cGCCCguGCUGGGGUUgcacgAGCGGgcgcgcucgcGGUUCAGc -3'
miRNA:   3'- -CGGG--CGAUCCCAG-----UUGUC----------UCAAGUUc -5'
7749 5' -51.8 NC_001973.1 + 151023 0.67 0.977352
Target:  5'- uGCCUGCUguccggcucggccgaAGGGUCAuuGCAG-GUcagacUCGAGc -3'
miRNA:   3'- -CGGGCGA---------------UCCCAGU--UGUCuCA-----AGUUC- -5'
7749 5' -51.8 NC_001973.1 + 146020 0.68 0.957347
Target:  5'- cGCCgGCUcgagcgcGGGUCGACGGAcgGggCGAGu -3'
miRNA:   3'- -CGGgCGAu------CCCAGUUGUCU--CaaGUUC- -5'
7749 5' -51.8 NC_001973.1 + 151096 0.69 0.944728
Target:  5'- cGCCCGCcGGGGUCGuuuGAGgUUAAa -3'
miRNA:   3'- -CGGGCGaUCCCAGUuguCUCaAGUUc -5'
7749 5' -51.8 NC_001973.1 + 130727 0.69 0.935084
Target:  5'- cGUCgGCcGGGG-CAAUcGAGUUCAAGa -3'
miRNA:   3'- -CGGgCGaUCCCaGUUGuCUCAAGUUC- -5'
7749 5' -51.8 NC_001973.1 + 127386 0.69 0.929886
Target:  5'- uGCCgGCaAGGGgCAAUcGAGUUCAAa -3'
miRNA:   3'- -CGGgCGaUCCCaGUUGuCUCAAGUUc -5'
7749 5' -51.8 NC_001973.1 + 129256 0.7 0.906574
Target:  5'- cGUCgGCaAGGGUCAuCGG-GUUCAAGc -3'
miRNA:   3'- -CGGgCGaUCCCAGUuGUCuCAAGUUC- -5'
7749 5' -51.8 NC_001973.1 + 146508 0.71 0.871905
Target:  5'- gGCCCGCgggaucgucGGG-CAGCAGAGggUCGAa -3'
miRNA:   3'- -CGGGCGau-------CCCaGUUGUCUCa-AGUUc -5'
7749 5' -51.8 NC_001973.1 + 150929 0.72 0.848347
Target:  5'- cGUCCGCcGGGGUCGuuGGAGgUCAGa -3'
miRNA:   3'- -CGGGCGaUCCCAGUugUCUCaAGUUc -5'
7749 5' -51.8 NC_001973.1 + 130570 0.74 0.747778
Target:  5'- cGUCgGCcGGGGUCGAUcGAGUUCAAa -3'
miRNA:   3'- -CGGgCGaUCCCAGUUGuCUCAAGUUc -5'
7749 5' -51.8 NC_001973.1 + 71969 0.74 0.717559
Target:  5'- cGUCgGCgAGGGUCAAUcGAGUUCAAa -3'
miRNA:   3'- -CGGgCGaUCCCAGUUGuCUCAAGUUc -5'
7749 5' -51.8 NC_001973.1 + 21189 0.75 0.676234
Target:  5'- cGUCgGCcGGGGUCGAUcGGGUUCAAGc -3'
miRNA:   3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5'
7749 5' -51.8 NC_001973.1 + 2830 0.75 0.676234
Target:  5'- cGUCgGCcGGGGUCGAUcGGGUUCAAGc -3'
miRNA:   3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5'
7749 5' -51.8 NC_001973.1 + 2712 0.75 0.676234
Target:  5'- cGUCgGCcGGGGUCGAUcGGGUUCAAGc -3'
miRNA:   3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5'
7749 5' -51.8 NC_001973.1 + 128948 0.75 0.676234
Target:  5'- cGCCgGCUAGGGUCGAU-GAGaUCAu- -3'
miRNA:   3'- -CGGgCGAUCCCAGUUGuCUCaAGUuc -5'
7749 5' -51.8 NC_001973.1 + 130805 0.76 0.613281
Target:  5'- cGUCgGCcGGGGUCGAUcGAGUUCGAGc -3'
miRNA:   3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5'
7749 5' -51.8 NC_001973.1 + 12455 0.77 0.58189
Target:  5'- cGUCgGCcGGGGUCGAUcGAGUUCAAGc -3'
miRNA:   3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5'
7749 5' -51.8 NC_001973.1 + 72056 0.77 0.550839
Target:  5'- cGUCgGCgAGGGUCAAUcGAGUUCAAGc -3'
miRNA:   3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5'
7749 5' -51.8 NC_001973.1 + 21091 0.77 0.550839
Target:  5'- cGUCgGCcGGGGUCAAUcGAGUUCAAGc -3'
miRNA:   3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5'
7749 5' -51.8 NC_001973.1 + 12377 0.77 0.550839
Target:  5'- cGUCgGCaAGGGUCAAUcGAGUUCAAGc -3'
miRNA:   3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.