miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7752 3' -56.3 NC_001973.1 + 23207 0.66 0.924638
Target:  5'- gCGCCGAcGAGCGcgcagUGGCGcagGGCCUGg -3'
miRNA:   3'- -GUGGCU-CUCGCuaa--GCCGC---UUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 70962 0.66 0.923021
Target:  5'- aCGCCGAGGGCaacAUcuacaaccgcaccgUCGGCaaGAGCCUGg -3'
miRNA:   3'- -GUGGCUCUCGc--UA--------------AGCCG--CUUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 137263 0.66 0.913467
Target:  5'- aGCCGAGuGUGcggCGGCgGGGCUCGg -3'
miRNA:   3'- gUGGCUCuCGCuaaGCCG-CUUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 55425 0.66 0.913467
Target:  5'- -uUCGucGGCGg--CGGCGGGCCCGa -3'
miRNA:   3'- guGGCucUCGCuaaGCCGCUUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 43705 0.66 0.913467
Target:  5'- gCACCGGcAGCGcUUCGGUGAggaagcgcuGCUCGa -3'
miRNA:   3'- -GUGGCUcUCGCuAAGCCGCU---------UGGGCa -5'
7752 3' -56.3 NC_001973.1 + 134359 0.66 0.901373
Target:  5'- aCGCCGAgGGGCGAUugcacUCGGcCGAuuauUCCGc -3'
miRNA:   3'- -GUGGCU-CUCGCUA-----AGCC-GCUu---GGGCa -5'
7752 3' -56.3 NC_001973.1 + 21054 0.66 0.901373
Target:  5'- -cCCGAGcuCGAgcUCGGCGGGCgCGUa -3'
miRNA:   3'- guGGCUCucGCUa-AGCCGCUUGgGCA- -5'
7752 3' -56.3 NC_001973.1 + 4901 0.66 0.894984
Target:  5'- aCGCCGGGuucguuaucGUGAcggaaacgUCGGCGGGCUCGUc -3'
miRNA:   3'- -GUGGCUCu--------CGCUa-------AGCCGCUUGGGCA- -5'
7752 3' -56.3 NC_001973.1 + 68817 0.66 0.894333
Target:  5'- cCACCGAGAucucgcccacgacGCGAUgaCGGCcAACCUGc -3'
miRNA:   3'- -GUGGCUCU-------------CGCUAa-GCCGcUUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 4143 0.66 0.894333
Target:  5'- cCACCaGucGGCGAUuaaguacUCGGUGggUCCGUc -3'
miRNA:   3'- -GUGG-CucUCGCUA-------AGCCGCuuGGGCA- -5'
7752 3' -56.3 NC_001973.1 + 137874 0.67 0.888372
Target:  5'- gCGCgGucAGGGcCGcgUCGGCGAGgCCCGa -3'
miRNA:   3'- -GUGgC--UCUC-GCuaAGCCGCUU-GGGCa -5'
7752 3' -56.3 NC_001973.1 + 20947 0.67 0.888372
Target:  5'- aGCCG-GcGCGGUaaacugagcUCGGCGGACgCGUa -3'
miRNA:   3'- gUGGCuCuCGCUA---------AGCCGCUUGgGCA- -5'
7752 3' -56.3 NC_001973.1 + 133286 0.67 0.888372
Target:  5'- gGCCGAGAacGCGGc-CGGCGGcgGCgCCGUc -3'
miRNA:   3'- gUGGCUCU--CGCUaaGCCGCU--UG-GGCA- -5'
7752 3' -56.3 NC_001973.1 + 160494 0.67 0.881539
Target:  5'- uGCCGgccAGGGuCGAUggaGGuCGAGCCCGa -3'
miRNA:   3'- gUGGC---UCUC-GCUAag-CC-GCUUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 28298 0.67 0.87449
Target:  5'- gGCCGAGcGcCGcgUCGGCGcaAACCuCGUu -3'
miRNA:   3'- gUGGCUCuC-GCuaAGCCGC--UUGG-GCA- -5'
7752 3' -56.3 NC_001973.1 + 90316 0.67 0.86723
Target:  5'- -gUCGGcGGGCGAggCGGUGcGCCCGa -3'
miRNA:   3'- guGGCU-CUCGCUaaGCCGCuUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 76459 0.67 0.86723
Target:  5'- uCGCCaaggacauGGGCGGcUCGGCGGuGCCCGa -3'
miRNA:   3'- -GUGGcu------CUCGCUaAGCCGCU-UGGGCa -5'
7752 3' -56.3 NC_001973.1 + 50099 0.67 0.86723
Target:  5'- cCACgGAGGGCGg--CGGCGccGCCgCGUa -3'
miRNA:   3'- -GUGgCUCUCGCuaaGCCGCu-UGG-GCA- -5'
7752 3' -56.3 NC_001973.1 + 71775 0.68 0.836188
Target:  5'- cCGCCGAGcuCGAggccggCGGCGccCCCGUc -3'
miRNA:   3'- -GUGGCUCucGCUaa----GCCGCuuGGGCA- -5'
7752 3' -56.3 NC_001973.1 + 119302 0.68 0.827958
Target:  5'- gACCGucgcguucaAGAGCGggUCGGC--GCCCGc -3'
miRNA:   3'- gUGGC---------UCUCGCuaAGCCGcuUGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.