miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7752 5' -63.4 NC_001973.1 + 24141 0.66 0.637273
Target:  5'- gGGuGCGcGcGCCGCCCGcCUCGgCgCUGGc -3'
miRNA:   3'- -CC-UGC-C-CGGCGGGCuGAGCgGgGAUC- -5'
7752 5' -63.4 NC_001973.1 + 21340 0.66 0.637273
Target:  5'- -aGCcGGCCGCCCGAgUUGCCggUGGu -3'
miRNA:   3'- ccUGcCCGGCGGGCUgAGCGGggAUC- -5'
7752 5' -63.4 NC_001973.1 + 6977 0.66 0.627667
Target:  5'- cGAacaGGGCCGCCgCGGCaaaaCGCCgCCa-- -3'
miRNA:   3'- cCUg--CCCGGCGG-GCUGa---GCGG-GGauc -5'
7752 5' -63.4 NC_001973.1 + 25937 0.66 0.618064
Target:  5'- cGGGCGGGCuCGCggCCGAgUC-CUCCUc- -3'
miRNA:   3'- -CCUGCCCG-GCG--GGCUgAGcGGGGAuc -5'
7752 5' -63.4 NC_001973.1 + 124379 0.66 0.618064
Target:  5'- cGGACaGGGCgcagCGCgCCGGC-CGCgCCUAc -3'
miRNA:   3'- -CCUG-CCCG----GCG-GGCUGaGCGgGGAUc -5'
7752 5' -63.4 NC_001973.1 + 124667 0.66 0.618064
Target:  5'- cGACGccccGCCGCCgCGGCUacaauUGCCCCgAGg -3'
miRNA:   3'- cCUGCc---CGGCGG-GCUGA-----GCGGGGaUC- -5'
7752 5' -63.4 NC_001973.1 + 76465 0.66 0.608471
Target:  5'- aGGACauGGGCgGCUCGGCggUGCCCg--- -3'
miRNA:   3'- -CCUG--CCCGgCGGGCUGa-GCGGGgauc -5'
7752 5' -63.4 NC_001973.1 + 30953 0.66 0.608471
Target:  5'- uGGuguCGGucGCCGCCUcGCUCGCCaCCa-- -3'
miRNA:   3'- -CCu--GCC--CGGCGGGcUGAGCGG-GGauc -5'
7752 5' -63.4 NC_001973.1 + 46502 0.67 0.564633
Target:  5'- cGGACGGccucGgCGCCCGACUacgaguacuacgcgaCGCCUCg-- -3'
miRNA:   3'- -CCUGCC----CgGCGGGCUGA---------------GCGGGGauc -5'
7752 5' -63.4 NC_001973.1 + 73625 0.67 0.542077
Target:  5'- cGGACGGcucGCCGUCCGcgcGCUCGUCgCa-- -3'
miRNA:   3'- -CCUGCC---CGGCGGGC---UGAGCGGgGauc -5'
7752 5' -63.4 NC_001973.1 + 132459 0.67 0.542077
Target:  5'- gGGGCGcGGCCucGUCgGGCUCGCCgCg-- -3'
miRNA:   3'- -CCUGC-CCGG--CGGgCUGAGCGGgGauc -5'
7752 5' -63.4 NC_001973.1 + 109163 0.67 0.532765
Target:  5'- cGGGCGagccGGUCGCCCGcgcGCUCGCCg---- -3'
miRNA:   3'- -CCUGC----CCGGCGGGC---UGAGCGGggauc -5'
7752 5' -63.4 NC_001973.1 + 158845 0.67 0.532765
Target:  5'- cGGACGaGCCGCCCaaaccgaGCUCgcgaGCCCCg-- -3'
miRNA:   3'- -CCUGCcCGGCGGGc------UGAG----CGGGGauc -5'
7752 5' -63.4 NC_001973.1 + 87549 0.68 0.51432
Target:  5'- cGGuCGaGGCCGCaUCGGCgguucCGCCCCa-- -3'
miRNA:   3'- -CCuGC-CCGGCG-GGCUGa----GCGGGGauc -5'
7752 5' -63.4 NC_001973.1 + 86962 0.68 0.505195
Target:  5'- cGACGGcGCCGUCCGcCcCGCCCg--- -3'
miRNA:   3'- cCUGCC-CGGCGGGCuGaGCGGGgauc -5'
7752 5' -63.4 NC_001973.1 + 40757 0.68 0.49614
Target:  5'- cGGACGcGCUGCCCG-CUCG-CUUUAGg -3'
miRNA:   3'- -CCUGCcCGGCGGGCuGAGCgGGGAUC- -5'
7752 5' -63.4 NC_001973.1 + 70003 0.69 0.460696
Target:  5'- cGAuCGGGCCGCCCucGACcagcgcgCGCUCCUc- -3'
miRNA:   3'- cCU-GCCCGGCGGG--CUGa------GCGGGGAuc -5'
7752 5' -63.4 NC_001973.1 + 47744 0.7 0.418358
Target:  5'- uGACGcGGCCGCCCGGCggaaucacgGCCuCCUc- -3'
miRNA:   3'- cCUGC-CCGGCGGGCUGag-------CGG-GGAuc -5'
7752 5' -63.4 NC_001973.1 + 138378 0.7 0.402097
Target:  5'- aGGGCaGGGCCucGCCCGACcCGUCCa--- -3'
miRNA:   3'- -CCUG-CCCGG--CGGGCUGaGCGGGgauc -5'
7752 5' -63.4 NC_001973.1 + 5744 0.7 0.386243
Target:  5'- cGGACGGGCCGCC-GAagCGgCCCa-- -3'
miRNA:   3'- -CCUGCCCGGCGGgCUgaGCgGGGauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.