miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7763 5' -55.2 NC_001973.1 + 158822 0.68 0.824157
Target:  5'- aUUgaagCCGGCGGcCGaGCGCGCgGACg -3'
miRNA:   3'- aAGaaaaGGCCGCU-GC-CGUGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 158747 0.67 0.886743
Target:  5'- -gCUgaagCCGGCGAcCGaGCGCGCgccGACc -3'
miRNA:   3'- aaGAaaa-GGCCGCU-GC-CGUGCGa--CUG- -5'
7763 5' -55.2 NC_001973.1 + 147073 0.67 0.893584
Target:  5'- -----aUCUGGCgcgugGAgGGCGCGCUGAa -3'
miRNA:   3'- aagaaaAGGCCG-----CUgCCGUGCGACUg -5'
7763 5' -55.2 NC_001973.1 + 143514 0.66 0.918565
Target:  5'- cUCacg-CCGGUGACGcGCccgAUGCUGGCc -3'
miRNA:   3'- aAGaaaaGGCCGCUGC-CG---UGCGACUG- -5'
7763 5' -55.2 NC_001973.1 + 135936 0.67 0.886046
Target:  5'- -------gCGGCGAUGGCGCGCcaagugcgccaagUGGCa -3'
miRNA:   3'- aagaaaagGCCGCUGCCGUGCG-------------ACUG- -5'
7763 5' -55.2 NC_001973.1 + 133294 0.68 0.857118
Target:  5'- -aCgcggCCGGCGGCGGCgccgucGCGC-GGCg -3'
miRNA:   3'- aaGaaaaGGCCGCUGCCG------UGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 125338 0.66 0.906557
Target:  5'- gUCUcUUCgCGGCGACGGUggaGC-GGCa -3'
miRNA:   3'- aAGAaAAG-GCCGCUGCCGug-CGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 123879 0.67 0.879671
Target:  5'- --------gGGaCGACGGCACGCUGGu -3'
miRNA:   3'- aagaaaaggCC-GCUGCCGUGCGACUg -5'
7763 5' -55.2 NC_001973.1 + 122525 0.67 0.879671
Target:  5'- gUCUUUgucgggggaCGaGCGGCGGCGgCGCUGGu -3'
miRNA:   3'- aAGAAAag-------GC-CGCUGCCGU-GCGACUg -5'
7763 5' -55.2 NC_001973.1 + 117504 0.69 0.806569
Target:  5'- -gCUUUggCCGcCGGCGGCGCGUaGACu -3'
miRNA:   3'- aaGAAAa-GGCcGCUGCCGUGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 105677 0.66 0.912683
Target:  5'- gUUUUgcgagUCGGuCGugaGCGGCACGCUGAa -3'
miRNA:   3'- aAGAAaa---GGCC-GC---UGCCGUGCGACUg -5'
7763 5' -55.2 NC_001973.1 + 104262 0.67 0.872373
Target:  5'- -----gUUCGGCGGCGGCGcCGCcgccgGGCu -3'
miRNA:   3'- aagaaaAGGCCGCUGCCGU-GCGa----CUG- -5'
7763 5' -55.2 NC_001973.1 + 100934 0.7 0.720444
Target:  5'- ------aCUGGUGAUGGCGCGCUcGGCc -3'
miRNA:   3'- aagaaaaGGCCGCUGCCGUGCGA-CUG- -5'
7763 5' -55.2 NC_001973.1 + 98338 0.7 0.730453
Target:  5'- -gCUgcagCGGCGGCGGCGCGCguucGGCc -3'
miRNA:   3'- aaGAaaagGCCGCUGCCGUGCGa---CUG- -5'
7763 5' -55.2 NC_001973.1 + 97278 0.67 0.886743
Target:  5'- gUCg---CCGGCGAgGGCuucuacaauuGCGCcGACg -3'
miRNA:   3'- aAGaaaaGGCCGCUgCCG----------UGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 96577 0.77 0.361682
Target:  5'- aUCUg--CgCGGUGGCGGCGgCGCUGGCg -3'
miRNA:   3'- aAGAaaaG-GCCGCUGCCGU-GCGACUG- -5'
7763 5' -55.2 NC_001973.1 + 95793 0.68 0.841027
Target:  5'- -gCUggaCCGGCguGACGGCuACGCgGACg -3'
miRNA:   3'- aaGAaaaGGCCG--CUGCCG-UGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 88550 0.69 0.773322
Target:  5'- gUCcacgCCGGCGuCGGCGCGCgcccuccgcacgcacUGGCg -3'
miRNA:   3'- aAGaaaaGGCCGCuGCCGUGCG---------------ACUG- -5'
7763 5' -55.2 NC_001973.1 + 81938 0.74 0.515718
Target:  5'- aUCggcgUCCGGCG-CGGagaaGCGCUGGCc -3'
miRNA:   3'- aAGaaa-AGGCCGCuGCCg---UGCGACUG- -5'
7763 5' -55.2 NC_001973.1 + 77011 0.74 0.496071
Target:  5'- cUCg--UCgggCGGCGGCGGCGCGCgcaagGACg -3'
miRNA:   3'- aAGaaaAG---GCCGCUGCCGUGCGa----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.