miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7806 3' -53.9 NC_001973.1 + 145019 0.66 0.974487
Target:  5'- cCGGCGGCGC-CCgaGUGCGGc-GCGa -3'
miRNA:   3'- cGCCGCUGUGuGGagCAUGUCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 30375 0.66 0.974487
Target:  5'- cGCGGCGACucgggugcGgGCCggcgCGgcgGCGGcgGCGg -3'
miRNA:   3'- -CGCCGCUG--------UgUGGa---GCa--UGUCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 109028 0.66 0.974487
Target:  5'- aGCGuCGGCucgucCACCUCGUcuCGGUUGuCGg -3'
miRNA:   3'- -CGCcGCUGu----GUGGAGCAu-GUCAAC-GC- -5'
7806 3' -53.9 NC_001973.1 + 61691 0.66 0.974487
Target:  5'- aGCGGCGuCggcgcgcucgaGCAUCUCGUACAGc---- -3'
miRNA:   3'- -CGCCGCuG-----------UGUGGAGCAUGUCaacgc -5'
7806 3' -53.9 NC_001973.1 + 98346 0.66 0.971779
Target:  5'- gGCGGCGGCGCGCgUUCGgccgcuuuCGGgcuuUGCc -3'
miRNA:   3'- -CGCCGCUGUGUG-GAGCau------GUCa---ACGc -5'
7806 3' -53.9 NC_001973.1 + 121305 0.66 0.971779
Target:  5'- cGCGGCG-CGCGCCg---GCGGacGCGc -3'
miRNA:   3'- -CGCCGCuGUGUGGagcaUGUCaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 134083 0.66 0.971779
Target:  5'- gGUGGCGAC-CGCUcggUCGgcCAGguucgGCGg -3'
miRNA:   3'- -CGCCGCUGuGUGG---AGCauGUCaa---CGC- -5'
7806 3' -53.9 NC_001973.1 + 104359 0.66 0.96887
Target:  5'- gGCGGCGACgaucaagcggGCGuCCUCGUccagcucgaccACGauggacuuGUUGCGg -3'
miRNA:   3'- -CGCCGCUG----------UGU-GGAGCA-----------UGU--------CAACGC- -5'
7806 3' -53.9 NC_001973.1 + 74806 0.66 0.96887
Target:  5'- cGCGcacGCGAgGCGCgUCGUGCGcgUGCu -3'
miRNA:   3'- -CGC---CGCUgUGUGgAGCAUGUcaACGc -5'
7806 3' -53.9 NC_001973.1 + 74041 0.66 0.96887
Target:  5'- uGUGGCGcAC-CACUUCGUACucGUcGCa -3'
miRNA:   3'- -CGCCGC-UGuGUGGAGCAUGu-CAaCGc -5'
7806 3' -53.9 NC_001973.1 + 40128 0.66 0.968568
Target:  5'- gGUGGCGACucgucGCGCCcaUCGUcucaaaguucucgGCGGUcGCGu -3'
miRNA:   3'- -CGCCGCUG-----UGUGG--AGCA-------------UGUCAaCGC- -5'
7806 3' -53.9 NC_001973.1 + 8100 0.66 0.965754
Target:  5'- aCGGCGAgCACcgGCCggcUCGUGCAGaucgGCa -3'
miRNA:   3'- cGCCGCU-GUG--UGG---AGCAUGUCaa--CGc -5'
7806 3' -53.9 NC_001973.1 + 6421 0.66 0.965754
Target:  5'- gGCGGCGGCGCGCCg---ACGagcGCGc -3'
miRNA:   3'- -CGCCGCUGUGUGGagcaUGUcaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 109127 0.66 0.95851
Target:  5'- cGCGGCGGCGgccucuugggcgcCGCCUCG-ACgAGccggGCGa -3'
miRNA:   3'- -CGCCGCUGU-------------GUGGAGCaUG-UCaa--CGC- -5'
7806 3' -53.9 NC_001973.1 + 31872 0.67 0.955106
Target:  5'- gGCGGUGGCGCGCa-CGU-CGGU-GUGg -3'
miRNA:   3'- -CGCCGCUGUGUGgaGCAuGUCAaCGC- -5'
7806 3' -53.9 NC_001973.1 + 94299 0.67 0.955106
Target:  5'- -aGGCGGCGCGCCcgccaUCGaGCAGg-GCa -3'
miRNA:   3'- cgCCGCUGUGUGG-----AGCaUGUCaaCGc -5'
7806 3' -53.9 NC_001973.1 + 96324 0.67 0.955106
Target:  5'- -aGGaUGGUGCGCCUCGUGCAGaaacagGCGa -3'
miRNA:   3'- cgCC-GCUGUGUGGAGCAUGUCaa----CGC- -5'
7806 3' -53.9 NC_001973.1 + 7948 0.67 0.955106
Target:  5'- cGUGGUGcACGCGCCcgCGUGCGcGUacgcGCGa -3'
miRNA:   3'- -CGCCGC-UGUGUGGa-GCAUGU-CAa---CGC- -5'
7806 3' -53.9 NC_001973.1 + 98115 0.67 0.955106
Target:  5'- aCGGUGGCGCACgUCG-ACGaugGCGg -3'
miRNA:   3'- cGCCGCUGUGUGgAGCaUGUcaaCGC- -5'
7806 3' -53.9 NC_001973.1 + 135935 0.67 0.951107
Target:  5'- cGCGGCGaugGCGCGCCaaGUGCgccaAGUgGCa -3'
miRNA:   3'- -CGCCGC---UGUGUGGagCAUG----UCAaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.