miRNA display CGI


Results 21 - 40 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7814 3' -65.5 NC_001973.1 + 106960 0.72 0.229079
Target:  5'- gCGCCgggCGCgCUCGGCGUgcgcGCGCUGCa -3'
miRNA:   3'- gGCGG---GCG-GAGCCGCGac--CGCGACGg -5'
7814 3' -65.5 NC_001973.1 + 27843 0.72 0.239664
Target:  5'- gCgGCCCGgUUggcCGGCGCUGGCgGCcgcgGCCg -3'
miRNA:   3'- -GgCGGGCgGA---GCCGCGACCG-CGa---CGG- -5'
7814 3' -65.5 NC_001973.1 + 124493 0.72 0.245107
Target:  5'- aCGCCCGCgCUcugcCGGCGCUGGC-CgacGCg -3'
miRNA:   3'- gGCGGGCG-GA----GCCGCGACCGcGa--CGg -5'
7814 3' -65.5 NC_001973.1 + 71726 0.72 0.245107
Target:  5'- gCCGCCgCGCCccCGGCGCccgcGGCcGCcccgGCCg -3'
miRNA:   3'- -GGCGG-GCGGa-GCCGCGa---CCG-CGa---CGG- -5'
7814 3' -65.5 NC_001973.1 + 18481 0.71 0.267913
Target:  5'- aCGUCCGCgCUcuuuauaaCGGCGCgaggGGCGCU-CCg -3'
miRNA:   3'- gGCGGGCG-GA--------GCCGCGa---CCGCGAcGG- -5'
7814 3' -65.5 NC_001973.1 + 14341 0.71 0.267913
Target:  5'- aCCGgCCGCaCUUGGCGUggucGGCGUgGUCg -3'
miRNA:   3'- -GGCgGGCG-GAGCCGCGa---CCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 150204 0.71 0.267913
Target:  5'- gCgGCUCgGCCUCGGCuuGCUGG-GCgGCCu -3'
miRNA:   3'- -GgCGGG-CGGAGCCG--CGACCgCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 94417 0.71 0.273876
Target:  5'- gCCGCCCGgaCCggCGGCGUUGGC-CcGUCg -3'
miRNA:   3'- -GGCGGGC--GGa-GCCGCGACCGcGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 86515 0.71 0.273876
Target:  5'- uUGUCCGCCgaccUGGCGCcgccGGCGC-GCCu -3'
miRNA:   3'- gGCGGGCGGa---GCCGCGa---CCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 34080 0.71 0.279945
Target:  5'- gCGCCa-UCUUGGCGgUGGCGUaGCCg -3'
miRNA:   3'- gGCGGgcGGAGCCGCgACCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 25721 0.7 0.28612
Target:  5'- gCGCgCCGCCcgCGcCGCcGGCGCgGCCu -3'
miRNA:   3'- gGCG-GGCGGa-GCcGCGaCCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 98246 0.7 0.28612
Target:  5'- uUCGUCuCGCUgcgCGGCGCUGGuCGCguucGCUc -3'
miRNA:   3'- -GGCGG-GCGGa--GCCGCGACC-GCGa---CGG- -5'
7814 3' -65.5 NC_001973.1 + 76450 0.7 0.298791
Target:  5'- aCGCgCGCCUCgccaaggacaugGGCgGCUcGGCGgUGCCc -3'
miRNA:   3'- gGCGgGCGGAG------------CCG-CGA-CCGCgACGG- -5'
7814 3' -65.5 NC_001973.1 + 128564 0.7 0.298791
Target:  5'- aCCGCuuGgCCgcCGGCaucucGCUGGCGCUGaUCa -3'
miRNA:   3'- -GGCGggC-GGa-GCCG-----CGACCGCGAC-GG- -5'
7814 3' -65.5 NC_001973.1 + 121229 0.7 0.305288
Target:  5'- gCGCCaCGCggCGGCGC-GGCGC-GUCg -3'
miRNA:   3'- gGCGG-GCGgaGCCGCGaCCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 8389 0.7 0.305288
Target:  5'- aCCGCagCCGCaucuaCUUGGCGCUgGGCGCgaacgGCa -3'
miRNA:   3'- -GGCG--GGCG-----GAGCCGCGA-CCGCGa----CGg -5'
7814 3' -65.5 NC_001973.1 + 64601 0.7 0.311893
Target:  5'- aCGCCCGCCggccCGGCGaaagucGGCGCcgaGCa -3'
miRNA:   3'- gGCGGGCGGa---GCCGCga----CCGCGa--CGg -5'
7814 3' -65.5 NC_001973.1 + 30367 0.7 0.311893
Target:  5'- gCCGCCgGCg-CGGCGacucgGGUGCggGCCg -3'
miRNA:   3'- -GGCGGgCGgaGCCGCga---CCGCGa-CGG- -5'
7814 3' -65.5 NC_001973.1 + 105717 0.7 0.311893
Target:  5'- aCCGCCUGCa--GGCGC-GGCGCcGUUu -3'
miRNA:   3'- -GGCGGGCGgagCCGCGaCCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 14614 0.7 0.314565
Target:  5'- gCCGCCCGgCugUCGGUGCgcgacuacgucaaucUGGUGCaaGCCa -3'
miRNA:   3'- -GGCGGGCgG--AGCCGCG---------------ACCGCGa-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.