miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7817 3' -53.4 NC_001973.1 + 160802 0.95 0.049407
Target:  5'- gCUCGGCgGGCGCGUAGGAUUUUACGCg -3'
miRNA:   3'- -GAGCCGgCCGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 160703 0.82 0.295175
Target:  5'- gCUCGG-CGGaCGCGUAGGAUUUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 160625 0.82 0.268561
Target:  5'- gCUCGG-CGGaCGCGUAAGAUUUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 160546 0.82 0.268561
Target:  5'- gCUCGG-CGGaCGCGUAAGAUUUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 160468 0.78 0.448712
Target:  5'- gCUCGG-CGGaCGCGUAGGAUUUUACGUg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 160390 0.82 0.268561
Target:  5'- gCUCGG-CGGaCGCGUAAGAUUUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 159164 0.66 0.977175
Target:  5'- aUUGGCCGGCGCc--AAGUUgaagaGCGCg -3'
miRNA:   3'- gAGCCGGCCGCGcauUUUAGga---UGCG- -5'
7817 3' -53.4 NC_001973.1 + 158691 0.66 0.974664
Target:  5'- -gCGGCCGaGCGCGcgccuaCCgACGCc -3'
miRNA:   3'- gaGCCGGC-CGCGCauuuuaGGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 152384 0.74 0.678224
Target:  5'- -aCGGCCGGCGCGgg----CggGCGCg -3'
miRNA:   3'- gaGCCGGCCGCGCauuuuaGgaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 151382 0.67 0.959048
Target:  5'- gUCGGCCGGgGuCGUcuGAGGUUagaauaACGCg -3'
miRNA:   3'- gAGCCGGCCgC-GCA--UUUUAGga----UGCG- -5'
7817 3' -53.4 NC_001973.1 + 151355 0.87 0.151465
Target:  5'- gCUCGG-CGGaCGCGUAGGAUCUUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 151210 0.68 0.93783
Target:  5'- cCUCGGCCGGCG-GUGccGGGUCUg---- -3'
miRNA:   3'- -GAGCCGGCCGCgCAU--UUUAGGaugcg -5'
7817 3' -53.4 NC_001973.1 + 151070 0.92 0.074219
Target:  5'- gCUCGG-CGGaCGCGUAGGAUCCUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 150961 0.92 0.068449
Target:  5'- gCUCGG-CGGaCGCGUAAAAUCCUACGCg -3'
miRNA:   3'- -GAGCCgGCC-GCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 150903 1 0.022868
Target:  5'- gCUCGGCCGaCGCGUAAGAUCCUACGCg -3'
miRNA:   3'- -GAGCCGGCcGCGCAUUUUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 147064 0.68 0.932874
Target:  5'- uUCGuGCCgaucuGGCGCGUGGAGg---GCGCg -3'
miRNA:   3'- gAGC-CGG-----CCGCGCAUUUUaggaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 146946 0.66 0.971958
Target:  5'- gUCGGCCGaG-GUG-AAGAUgUUGCGCa -3'
miRNA:   3'- gAGCCGGC-CgCGCaUUUUAgGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 140746 0.72 0.795406
Target:  5'- --aGGCUGGCGCuGUAccgcGAGUUCUcGCGCg -3'
miRNA:   3'- gagCCGGCCGCG-CAU----UUUAGGA-UGCG- -5'
7817 3' -53.4 NC_001973.1 + 139884 0.71 0.821965
Target:  5'- aUCGGCaagcuCGaGCGCGUGGugucGGUgCUGCGCg -3'
miRNA:   3'- gAGCCG-----GC-CGCGCAUU----UUAgGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 138577 0.67 0.95527
Target:  5'- uUCGGCCaGCGCGccc--UCCggAUGCu -3'
miRNA:   3'- gAGCCGGcCGCGCauuuuAGGa-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.