miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7822 5' -58.2 NC_001973.1 + 6716 0.66 0.869145
Target:  5'- -----uGAAUCCCGCGcCGuCGuuGGCCg -3'
miRNA:   3'- ccgcauUUUGGGGUGC-GC-GCggCCGG- -5'
7822 5' -58.2 NC_001973.1 + 137274 0.66 0.869145
Target:  5'- cGGCGgcgGGGCUcggCCGCGCGCGUUuuauacgaGGCUu -3'
miRNA:   3'- -CCGCau-UUUGG---GGUGCGCGCGG--------CCGG- -5'
7822 5' -58.2 NC_001973.1 + 95232 0.66 0.869145
Target:  5'- aGGCGcacccGCaCCUGCGCGUGCUGcCCu -3'
miRNA:   3'- -CCGCauuu-UG-GGGUGCGCGCGGCcGG- -5'
7822 5' -58.2 NC_001973.1 + 99330 0.66 0.869145
Target:  5'- aGUGUAucACCaaggaCGCGCGCGCgucgacuucgccCGGCg -3'
miRNA:   3'- cCGCAUuuUGGg----GUGCGCGCG------------GCCGg -5'
7822 5' -58.2 NC_001973.1 + 34637 0.66 0.869145
Target:  5'- uGGUaGUaGAAGCCCgACGUGUG-CGGCa -3'
miRNA:   3'- -CCG-CA-UUUUGGGgUGCGCGCgGCCGg -5'
7822 5' -58.2 NC_001973.1 + 83751 0.66 0.868426
Target:  5'- uGGagGUGGAGCUggaCCGCGCGCagcgcgaccucgaGUCGGUCg -3'
miRNA:   3'- -CCg-CAUUUUGG---GGUGCGCG-------------CGGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 81788 0.66 0.864799
Target:  5'- cGGCGcgAAAGugcacggccgcggugUCCgGCGC-CGCCGGCg -3'
miRNA:   3'- -CCGCa-UUUU---------------GGGgUGCGcGCGGCCGg -5'
7822 5' -58.2 NC_001973.1 + 130632 0.66 0.861862
Target:  5'- cGCGUAGGAUuuUACGU--GCCGGCa -3'
miRNA:   3'- cCGCAUUUUGggGUGCGcgCGGCCGg -5'
7822 5' -58.2 NC_001973.1 + 127526 0.66 0.861862
Target:  5'- cGCGUAGGAUuuUACGU--GCCGGCa -3'
miRNA:   3'- cCGCAUUUUGggGUGCGcgCGGCCGg -5'
7822 5' -58.2 NC_001973.1 + 152350 0.66 0.861862
Target:  5'- gGGCGcgauAGCgCCGCGCGaaugagcgaGCCggacGGCCg -3'
miRNA:   3'- -CCGCauu-UUGgGGUGCGCg--------CGG----CCGG- -5'
7822 5' -58.2 NC_001973.1 + 123488 0.66 0.861123
Target:  5'- aGGCGgcucGCCggcucgucgcacaCCACgGCGCGCUcGCCg -3'
miRNA:   3'- -CCGCauuuUGG-------------GGUG-CGCGCGGcCGG- -5'
7822 5' -58.2 NC_001973.1 + 82933 0.66 0.859639
Target:  5'- cGGCGcgccgAucGCCCCGuccgaaccgacgccCGCGuCGCCGccGCCg -3'
miRNA:   3'- -CCGCa----UuuUGGGGU--------------GCGC-GCGGC--CGG- -5'
7822 5' -58.2 NC_001973.1 + 44868 0.66 0.854384
Target:  5'- aGGCGUccacGAugCCCACGCacacggagGUG-CGGUCg -3'
miRNA:   3'- -CCGCAu---UUugGGGUGCG--------CGCgGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 20068 0.66 0.854384
Target:  5'- cGCGUAcugguCCCCGCcgaGCGagcacaCGGCCa -3'
miRNA:   3'- cCGCAUuuu--GGGGUGcg-CGCg-----GCCGG- -5'
7822 5' -58.2 NC_001973.1 + 128106 0.66 0.854384
Target:  5'- cGCGUAcugguCCCCGCcgaGCGagcacaCGGCCa -3'
miRNA:   3'- cCGCAUuuu--GGGGUGcg-CGCg-----GCCGG- -5'
7822 5' -58.2 NC_001973.1 + 158924 0.66 0.854384
Target:  5'- --aGUc--GCgCCGCGCGCGaCCGaGCCg -3'
miRNA:   3'- ccgCAuuuUGgGGUGCGCGC-GGC-CGG- -5'
7822 5' -58.2 NC_001973.1 + 5761 0.66 0.854384
Target:  5'- cGGCccacGGCgCUACGCGCGUC-GCCg -3'
miRNA:   3'- -CCGcauuUUGgGGUGCGCGCGGcCGG- -5'
7822 5' -58.2 NC_001973.1 + 23726 0.66 0.854384
Target:  5'- gGGCucgcUGAcgGGCCCgACGgcgacCGCGCCcGGCCu -3'
miRNA:   3'- -CCGc---AUU--UUGGGgUGC-----GCGCGG-CCGG- -5'
7822 5' -58.2 NC_001973.1 + 49688 0.66 0.853625
Target:  5'- cGGCGauGGACCugucgagCCGCGcCGUGCaguaucCGGCCg -3'
miRNA:   3'- -CCGCauUUUGG-------GGUGC-GCGCG------GCCGG- -5'
7822 5' -58.2 NC_001973.1 + 29765 0.66 0.846716
Target:  5'- uGCGaGAcGCUCCA-G-GCGCUGGCCg -3'
miRNA:   3'- cCGCaUUuUGGGGUgCgCGCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.