miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
783 5' -48.6 NC_000852.3 + 48967 0.66 0.999994
Target:  5'- cCGCCGGuuACAAaaCCGUUGGuCGuGUa -3'
miRNA:   3'- -GUGGCCuuUGUUggGGUAAUU-GCuCG- -5'
783 5' -48.6 NC_000852.3 + 287886 0.66 0.999994
Target:  5'- aUACCGauGAuACAcuCCCCGau-ACGAGCa -3'
miRNA:   3'- -GUGGC--CUuUGUu-GGGGUaauUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 112091 0.66 0.999991
Target:  5'- aGCUGGGAGgGuccguaguaccagGCCUCGUgggucUGGCGGGCa -3'
miRNA:   3'- gUGGCCUUUgU-------------UGGGGUA-----AUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 104956 0.66 0.999991
Target:  5'- aACUGGuagaaAGAUAGCCCCAa----GAGCa -3'
miRNA:   3'- gUGGCC-----UUUGUUGGGGUaauugCUCG- -5'
783 5' -48.6 NC_000852.3 + 27451 0.66 0.999988
Target:  5'- -uCUGGGAACGgugACCCCAguUUGAUGAa- -3'
miRNA:   3'- guGGCCUUUGU---UGGGGU--AAUUGCUcg -5'
783 5' -48.6 NC_000852.3 + 250998 0.66 0.999987
Target:  5'- cCACCuGGAAucauagaaauucuaGCAGCUCgUAUggcgUAACGAGCg -3'
miRNA:   3'- -GUGG-CCUU--------------UGUUGGG-GUA----AUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 173318 0.66 0.999984
Target:  5'- cCGuuGGaAAACGACCUCAU--ACGGGa -3'
miRNA:   3'- -GUggCC-UUUGUUGGGGUAauUGCUCg -5'
783 5' -48.6 NC_000852.3 + 212493 0.66 0.999978
Target:  5'- aCACCGGGggUAGCgCCGgugAAgGuGCc -3'
miRNA:   3'- -GUGGCCUuuGUUGgGGUaa-UUgCuCG- -5'
783 5' -48.6 NC_000852.3 + 135831 0.66 0.999978
Target:  5'- aACCG--AGCAGCCCC-UUcGCGAGa -3'
miRNA:   3'- gUGGCcuUUGUUGGGGuAAuUGCUCg -5'
783 5' -48.6 NC_000852.3 + 124705 0.66 0.999978
Target:  5'- uGgCGuuGAUAucuGCCCCGUuguUGACGAGCa -3'
miRNA:   3'- gUgGCcuUUGU---UGGGGUA---AUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 193136 0.66 0.999978
Target:  5'- uCGCUGcGAGACAACCCCccgUAuCGAc- -3'
miRNA:   3'- -GUGGC-CUUUGUUGGGGua-AUuGCUcg -5'
783 5' -48.6 NC_000852.3 + 139106 0.67 0.999961
Target:  5'- uCACCGGuauguacuuuAAGCAACUCgG--AACGAGUg -3'
miRNA:   3'- -GUGGCC----------UUUGUUGGGgUaaUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 329153 0.67 0.999961
Target:  5'- aACCG---ACGACCCCGUUugucgauACGAGa -3'
miRNA:   3'- gUGGCcuuUGUUGGGGUAAu------UGCUCg -5'
783 5' -48.6 NC_000852.3 + 1591 0.67 0.999961
Target:  5'- aACCG---ACGACCCCGUUugucgauACGAGa -3'
miRNA:   3'- gUGGCcuuUGUUGGGGUAAu------UGCUCg -5'
783 5' -48.6 NC_000852.3 + 24912 0.67 0.999959
Target:  5'- aCGCC-GAAAgAACUCCAaguagccacugGACGAGCg -3'
miRNA:   3'- -GUGGcCUUUgUUGGGGUaa---------UUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 81903 0.67 0.999948
Target:  5'- aUAUCGGGAAgAGCCgUugcGACGGGCu -3'
miRNA:   3'- -GUGGCCUUUgUUGGgGuaaUUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 20623 0.67 0.999948
Target:  5'- uCAUgGGAGACAcgauaaCCAUUGACGGGa -3'
miRNA:   3'- -GUGgCCUUUGUugg---GGUAAUUGCUCg -5'
783 5' -48.6 NC_000852.3 + 31981 0.67 0.999947
Target:  5'- uCGCUGGGauaaaagGACGACCauuCAU--ACGAGCa -3'
miRNA:   3'- -GUGGCCU-------UUGUUGGg--GUAauUGCUCG- -5'
783 5' -48.6 NC_000852.3 + 258670 0.67 0.999945
Target:  5'- aGCgGGAAAUAACCUUAcaacugguuCGAGCa -3'
miRNA:   3'- gUGgCCUUUGUUGGGGUaauu-----GCUCG- -5'
783 5' -48.6 NC_000852.3 + 270785 0.68 0.999854
Target:  5'- uCACCGGGuccuaAACcauCCCCug-GAcCGAGCg -3'
miRNA:   3'- -GUGGCCU-----UUGuu-GGGGuaaUU-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.