miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7901 5' -53 NC_001973.1 + 83655 0.72 0.775627
Target:  5'- aAGCGCUgcGGCGGCCcgcucgcuUCGACGa -3'
miRNA:   3'- -UCGCGAaaCUGCCGGuucu----AGCUGCg -5'
7901 5' -53 NC_001973.1 + 28418 0.72 0.78503
Target:  5'- gAGCGCgcUUGGCGGCCGcGGcCGcCGCc -3'
miRNA:   3'- -UCGCGa-AACUGCCGGUuCUaGCuGCG- -5'
7901 5' -53 NC_001973.1 + 81788 0.72 0.794291
Target:  5'- cGGCGCgaaagUGcACGGCCGcGGUgucCGGCGCc -3'
miRNA:   3'- -UCGCGaa---AC-UGCCGGUuCUA---GCUGCG- -5'
7901 5' -53 NC_001973.1 + 46216 0.72 0.794291
Target:  5'- cGCGCgc-GACGGCC-GGGUCauguGCGCg -3'
miRNA:   3'- uCGCGaaaCUGCCGGuUCUAGc---UGCG- -5'
7901 5' -53 NC_001973.1 + 45955 0.71 0.812352
Target:  5'- cGCGCUcUUGACGGCgGc---CGGCGCg -3'
miRNA:   3'- uCGCGA-AACUGCCGgUucuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 51465 0.71 0.821134
Target:  5'- gGGCGagcucgaGCGGCC-GGGUCGAUGCg -3'
miRNA:   3'- -UCGCgaaac--UGCCGGuUCUAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 158680 0.71 0.821134
Target:  5'- cGGCGaagccGGCGGCCGAGcgCG-CGCc -3'
miRNA:   3'- -UCGCgaaa-CUGCCGGUUCuaGCuGCG- -5'
7901 5' -53 NC_001973.1 + 5947 0.71 0.821134
Target:  5'- uGCGCgac-GCGGCCGgcGGAUgCGACGUc -3'
miRNA:   3'- uCGCGaaacUGCCGGU--UCUA-GCUGCG- -5'
7901 5' -53 NC_001973.1 + 139743 0.71 0.823735
Target:  5'- cGCGCgcagcacaccaucaaGACGGCCGucuuccaauGGAUCGACGa -3'
miRNA:   3'- uCGCGaaa------------CUGCCGGU---------UCUAGCUGCg -5'
7901 5' -53 NC_001973.1 + 105856 0.71 0.824598
Target:  5'- gAGCGCUUcgagcacgcccuugaUGACGGUgGcGA-CGACGCc -3'
miRNA:   3'- -UCGCGAA---------------ACUGCCGgUuCUaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 69518 0.71 0.828033
Target:  5'- uGGCGCUcuuguacUUGACGuagcgcaGCCGGGAgUCGAgCGCg -3'
miRNA:   3'- -UCGCGA-------AACUGC-------CGGUUCU-AGCU-GCG- -5'
7901 5' -53 NC_001973.1 + 69854 0.71 0.828887
Target:  5'- cGGCGUUUUGAgccugaaCGGCCAGGGcaagUCGcccgaaaacacGCGCa -3'
miRNA:   3'- -UCGCGAAACU-------GCCGGUUCU----AGC-----------UGCG- -5'
7901 5' -53 NC_001973.1 + 106643 0.71 0.829739
Target:  5'- cGCGac---GCGGCCAAGGucgccgaggcgcUCGACGCg -3'
miRNA:   3'- uCGCgaaacUGCCGGUUCU------------AGCUGCG- -5'
7901 5' -53 NC_001973.1 + 61008 0.71 0.829739
Target:  5'- aGGCGCUcuucCGGCgGAGGcgcgCGACGCa -3'
miRNA:   3'- -UCGCGAaacuGCCGgUUCUa---GCUGCG- -5'
7901 5' -53 NC_001973.1 + 27857 0.71 0.838159
Target:  5'- cGGCGC--UGGCGGCCGcggccgcgGGcgCgGGCGCg -3'
miRNA:   3'- -UCGCGaaACUGCCGGU--------UCuaG-CUGCG- -5'
7901 5' -53 NC_001973.1 + 160478 0.71 0.844756
Target:  5'- cGCGUaggauuuuacgUGcCGGCCAGGGUCGAUGg -3'
miRNA:   3'- uCGCGaa---------ACuGCCGGUUCUAGCUGCg -5'
7901 5' -53 NC_001973.1 + 63620 0.71 0.846385
Target:  5'- cGCGCgc--ACGGCCAaaucggccgcguGGggCGGCGCg -3'
miRNA:   3'- uCGCGaaacUGCCGGU------------UCuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 102897 0.71 0.846385
Target:  5'- cAGCGCgcgGA-GGCCAGcAUCGACaGCa -3'
miRNA:   3'- -UCGCGaaaCUgCCGGUUcUAGCUG-CG- -5'
7901 5' -53 NC_001973.1 + 104613 0.7 0.852822
Target:  5'- cGGCGCgcgaaaagacGACGuGCCucAGAUCGAgCGCg -3'
miRNA:   3'- -UCGCGaaa-------CUGC-CGGu-UCUAGCU-GCG- -5'
7901 5' -53 NC_001973.1 + 36315 0.7 0.854411
Target:  5'- gGGCGCc---GCGGCCGAcgcGGcCGACGCg -3'
miRNA:   3'- -UCGCGaaacUGCCGGUU---CUaGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.