miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7911 3' -53 NC_001973.1 + 158764 0.66 0.965443
Target:  5'- ----aGCGCgcGCCGaccuacaCGcCCGACGCc -3'
miRNA:   3'- aaaaaUGCGaaCGGCg------GCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 158620 0.8 0.352878
Target:  5'- -----cCGCcgUUGCCGCCGcCCGGCGCg -3'
miRNA:   3'- aaaaauGCG--AACGGCGGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 158376 0.67 0.950395
Target:  5'- ----cGCGCccgcGCCGaCuCGUCCGAuCGCg -3'
miRNA:   3'- aaaaaUGCGaa--CGGC-G-GCAGGCU-GCG- -5'
7911 3' -53 NC_001973.1 + 158031 0.66 0.968636
Target:  5'- ---gUGCGCc-GCCGCCGcgcCCGuGCGUa -3'
miRNA:   3'- aaaaAUGCGaaCGGCGGCa--GGC-UGCG- -5'
7911 3' -53 NC_001973.1 + 155637 0.74 0.650045
Target:  5'- ------aGCUUGCaGCCGcUCCGGCGCc -3'
miRNA:   3'- aaaaaugCGAACGgCGGC-AGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 154027 0.78 0.45774
Target:  5'- -gUUUGaGCUUGUCGCCGggcCCGAUGCa -3'
miRNA:   3'- aaAAAUgCGAACGGCGGCa--GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 151013 0.66 0.97695
Target:  5'- --aUUAUGauugUGCCuGCUGUCCGGCu- -3'
miRNA:   3'- aaaAAUGCga--ACGG-CGGCAGGCUGcg -5'
7911 3' -53 NC_001973.1 + 149320 0.68 0.926167
Target:  5'- ----gGgGCcUGUCGCUcucagaGUCCGACGCg -3'
miRNA:   3'- aaaaaUgCGaACGGCGG------CAGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 147810 0.66 0.976702
Target:  5'- ----gGCGaCUcguccuucgagacUGCCGCCG-CCGcCGCu -3'
miRNA:   3'- aaaaaUGC-GA-------------ACGGCGGCaGGCuGCG- -5'
7911 3' -53 NC_001973.1 + 144351 0.67 0.962379
Target:  5'- ---aUGCGCgaggacgaggacgaGCCGCCG-CCGcCGCc -3'
miRNA:   3'- aaaaAUGCGaa------------CGGCGGCaGGCuGCG- -5'
7911 3' -53 NC_001973.1 + 138555 0.66 0.97695
Target:  5'- ----cGCGCUcGCCGUCGUauuugacuucggCCaGCGCg -3'
miRNA:   3'- aaaaaUGCGAaCGGCGGCA------------GGcUGCG- -5'
7911 3' -53 NC_001973.1 + 137835 0.66 0.971614
Target:  5'- ----cGCGCggcGCCGCCaUCagcgGGCGCa -3'
miRNA:   3'- aaaaaUGCGaa-CGGCGGcAGg---CUGCG- -5'
7911 3' -53 NC_001973.1 + 136579 0.7 0.867084
Target:  5'- ----gGCGC-UGCgCGCCGgCgCGACGCu -3'
miRNA:   3'- aaaaaUGCGaACG-GCGGCaG-GCUGCG- -5'
7911 3' -53 NC_001973.1 + 133853 0.83 0.247396
Target:  5'- ---aUGCaCUUGCCGCCGUCCGuguaGCGCa -3'
miRNA:   3'- aaaaAUGcGAACGGCGGCAGGC----UGCG- -5'
7911 3' -53 NC_001973.1 + 133760 0.68 0.9366
Target:  5'- ----aACGCggGCaCGUCGUCC-ACGCc -3'
miRNA:   3'- aaaaaUGCGaaCG-GCGGCAGGcUGCG- -5'
7911 3' -53 NC_001973.1 + 133493 0.68 0.920576
Target:  5'- ----cACGCUcG-CGCCGUCC-ACGCu -3'
miRNA:   3'- aaaaaUGCGAaCgGCGGCAGGcUGCG- -5'
7911 3' -53 NC_001973.1 + 133338 0.66 0.968636
Target:  5'- ----cGCGCgacGCCGaCCGUCgCGAaccCGCu -3'
miRNA:   3'- aaaaaUGCGaa-CGGC-GGCAG-GCU---GCG- -5'
7911 3' -53 NC_001973.1 + 128565 0.72 0.771552
Target:  5'- -----cCGCUUGgCCGCCGgcaucucgCUGGCGCu -3'
miRNA:   3'- aaaaauGCGAAC-GGCGGCa-------GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 124498 0.75 0.608266
Target:  5'- ----cGCGCUcUGCCGgCGcuggCCGACGCg -3'
miRNA:   3'- aaaaaUGCGA-ACGGCgGCa---GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 124270 0.7 0.881875
Target:  5'- ----gACGUggGcCCGUCGgCCGACGCu -3'
miRNA:   3'- aaaaaUGCGaaC-GGCGGCaGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.