miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7911 5' -58.7 NC_001973.1 + 45856 0.75 0.320704
Target:  5'- uGGGCGucGCGGGCGCGcgcUCCucGGCcGCGGCg -3'
miRNA:   3'- -UCCGC--CGCUUGCGC---AGG--UCGuUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 53414 0.75 0.327889
Target:  5'- cGGGCGGagcgcCGGGCGCGUcgaagcaguacaCCAGCAcgcacggguaGCGGCg -3'
miRNA:   3'- -UCCGCC-----GCUUGCGCA------------GGUCGU----------UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 132041 0.75 0.327889
Target:  5'- uAGGCGGCccACGCGUUUAGgcacacgcccacCGACGGCg -3'
miRNA:   3'- -UCCGCCGcuUGCGCAGGUC------------GUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 5852 0.75 0.330796
Target:  5'- cGGCGaGCGcACGCG-CCGGCGucucgagaggcugguGCGGCg -3'
miRNA:   3'- uCCGC-CGCuUGCGCaGGUCGU---------------UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 5956 0.75 0.334457
Target:  5'- cGGcCGGCGGAUGCGacgUCCuGCAcuugcacGCGGCg -3'
miRNA:   3'- uCC-GCCGCUUGCGC---AGGuCGU-------UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 96896 0.75 0.342614
Target:  5'- -cGCGGCGGGCGCGUCggaucguucuCGGCcguuCGGCg -3'
miRNA:   3'- ucCGCCGCUUGCGCAG----------GUCGuu--GCCG- -5'
7911 5' -58.7 NC_001973.1 + 53858 0.75 0.350153
Target:  5'- cGGCGGCGGcgGCGcCG-CCGagcGCGGCGGCc -3'
miRNA:   3'- uCCGCCGCU--UGC-GCaGGU---CGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 44399 0.74 0.35781
Target:  5'- cGGCGGgGGuucuCGCG--CAGCAGCGGCu -3'
miRNA:   3'- uCCGCCgCUu---GCGCagGUCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 7753 0.74 0.373472
Target:  5'- cGGC-GCGAAcCGCGg-CGGCGGCGGCg -3'
miRNA:   3'- uCCGcCGCUU-GCGCagGUCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 59893 0.74 0.373472
Target:  5'- cGGCGGCGcggugucggccAACGCGagCCAGCcgcgcgccGCGGCg -3'
miRNA:   3'- uCCGCCGC-----------UUGCGCa-GGUCGu-------UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 123327 0.74 0.381476
Target:  5'- cGGGCuccacGCGcACGCGcUCCAGCAcggACGGCc -3'
miRNA:   3'- -UCCGc----CGCuUGCGC-AGGUCGU---UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 121709 0.74 0.397822
Target:  5'- cGGCGGCGucgucguccuCGuCGUCCcaacgguGCGGCGGCa -3'
miRNA:   3'- uCCGCCGCuu--------GC-GCAGGu------CGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 80459 0.73 0.414612
Target:  5'- uGGCGGCGGuccgGCG-CCAGCu-CGGCc -3'
miRNA:   3'- uCCGCCGCUug--CGCaGGUCGuuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 4649 0.73 0.414612
Target:  5'- cGGCGGCGGGCGCcgUCGGCGAguCGGa -3'
miRNA:   3'- uCCGCCGCUUGCGcaGGUCGUU--GCCg -5'
7911 5' -58.7 NC_001973.1 + 132620 0.73 0.414612
Target:  5'- uGGaGGCGAGCGCGgagCCgAGC-ACGGUg -3'
miRNA:   3'- uCCgCCGCUUGCGCa--GG-UCGuUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 101967 0.73 0.423168
Target:  5'- uGGCGGCGAcgauGCGCG-CCAGCGugucCGuGUg -3'
miRNA:   3'- uCCGCCGCU----UGCGCaGGUCGUu---GC-CG- -5'
7911 5' -58.7 NC_001973.1 + 50087 0.73 0.423168
Target:  5'- gGGGCGGCG-GCGCcacggagGGCGGCGGCg -3'
miRNA:   3'- -UCCGCCGCuUGCGcagg---UCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 55676 0.73 0.431829
Target:  5'- cGGCGGUGAAuCGCGUCCcgucgcGCAccucuCGGUg -3'
miRNA:   3'- uCCGCCGCUU-GCGCAGGu-----CGUu----GCCG- -5'
7911 5' -58.7 NC_001973.1 + 112747 0.72 0.45842
Target:  5'- -cGCGGCGAACgGCGaCCGuGCGGcCGGCu -3'
miRNA:   3'- ucCGCCGCUUG-CGCaGGU-CGUU-GCCG- -5'
7911 5' -58.7 NC_001973.1 + 96770 0.72 0.466566
Target:  5'- cGGGCGGCGuggcggccAACGCGgcccaguacaugUUCAGCAguauuucgaguacGCGGCg -3'
miRNA:   3'- -UCCGCCGC--------UUGCGC------------AGGUCGU-------------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.