miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7959 5' -64.9 NC_001973.1 + 93588 0.7 0.323099
Target:  5'- gUCGCGUa-GUGCCCGCgCUGGCgGACa -3'
miRNA:   3'- gAGCGCAcgCGCGGGUGgGGCCG-CUG- -5'
7959 5' -64.9 NC_001973.1 + 54667 0.7 0.330042
Target:  5'- -gCGCGUGuCGCccacGCCCACCUCGcCGAUg -3'
miRNA:   3'- gaGCGCAC-GCG----CGGGUGGGGCcGCUG- -5'
7959 5' -64.9 NC_001973.1 + 143147 0.7 0.336384
Target:  5'- ---uCGUGCGUGCCCGCaucgacgCCgGGCGGCu -3'
miRNA:   3'- gagcGCACGCGCGGGUG-------GGgCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 102662 0.7 0.337094
Target:  5'- gCUCGUGccagGUGCGCCUcaagaaucgcgACCUCGGCGuCg -3'
miRNA:   3'- -GAGCGCa---CGCGCGGG-----------UGGGGCCGCuG- -5'
7959 5' -64.9 NC_001973.1 + 95889 0.7 0.337094
Target:  5'- -cCGCGagcUGCGCG-CCGCCaucgaCGGCGGCc -3'
miRNA:   3'- gaGCGC---ACGCGCgGGUGGg----GCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 63937 0.69 0.351525
Target:  5'- -cUGCGUGC-CGCugauCCAUCaCCGGCGGCu -3'
miRNA:   3'- gaGCGCACGcGCG----GGUGG-GGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 71740 0.69 0.358904
Target:  5'- --gGCGccCGCGgCCGCCCCGGCcGCg -3'
miRNA:   3'- gagCGCacGCGCgGGUGGGGCCGcUG- -5'
7959 5' -64.9 NC_001973.1 + 4311 0.69 0.358904
Target:  5'- gUCGaUGaGCGCGCCCAgCCCGcGCucGACg -3'
miRNA:   3'- gAGC-GCaCGCGCGGGUgGGGC-CG--CUG- -5'
7959 5' -64.9 NC_001973.1 + 56344 0.69 0.373983
Target:  5'- gCUCGCG-GcCGCGCUCggGCCCCGacuCGGCg -3'
miRNA:   3'- -GAGCGCaC-GCGCGGG--UGGGGCc--GCUG- -5'
7959 5' -64.9 NC_001973.1 + 133674 0.69 0.373983
Target:  5'- --aGCGa--GCGCCCGaaCCGGCGACa -3'
miRNA:   3'- gagCGCacgCGCGGGUggGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 89426 0.69 0.37705
Target:  5'- gCUCGCGUaucaugcguucgGCGCGCacggACCCCucgcggcucacgucgGGCGACa -3'
miRNA:   3'- -GAGCGCA------------CGCGCGgg--UGGGG---------------CCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 120602 0.69 0.384791
Target:  5'- gUCGCgGUGCGCcuuccacgccGCCUaucugguggacgagcGCgCCGGCGACg -3'
miRNA:   3'- gAGCG-CACGCG----------CGGG---------------UGgGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 83858 0.69 0.389485
Target:  5'- -aCGCGaGCGaGCUCGCCCgCGcGCGGCg -3'
miRNA:   3'- gaGCGCaCGCgCGGGUGGG-GC-CGCUG- -5'
7959 5' -64.9 NC_001973.1 + 81110 0.69 0.389485
Target:  5'- gCUCGUugaagGCGCGCUugCGCCCCGacGUGACg -3'
miRNA:   3'- -GAGCGca---CGCGCGG--GUGGGGC--CGCUG- -5'
7959 5' -64.9 NC_001973.1 + 158024 0.69 0.389485
Target:  5'- aUCGgGUGUGCGCcgccgCCGCgCCCGugcguaGCGACg -3'
miRNA:   3'- gAGCgCACGCGCG-----GGUG-GGGC------CGCUG- -5'
7959 5' -64.9 NC_001973.1 + 7277 0.69 0.389485
Target:  5'- -gCGCG-GCGCGCCCGCUaCCGGg--- -3'
miRNA:   3'- gaGCGCaCGCGCGGGUGG-GGCCgcug -5'
7959 5' -64.9 NC_001973.1 + 82926 0.68 0.397393
Target:  5'- -aCGCGUucgGCGCGCCgauCGCCCCGuccgaacCGACg -3'
miRNA:   3'- gaGCGCA---CGCGCGG---GUGGGGCc------GCUG- -5'
7959 5' -64.9 NC_001973.1 + 158632 0.68 0.397393
Target:  5'- -cCGCccgGCGCGCCCgacgACCCguuCGGCGAg -3'
miRNA:   3'- gaGCGca-CGCGCGGG----UGGG---GCCGCUg -5'
7959 5' -64.9 NC_001973.1 + 45967 0.68 0.402989
Target:  5'- --gGCGgccgGCGCGCUCGCCCUGcugucgcuggugccGCGAUg -3'
miRNA:   3'- gagCGCa---CGCGCGGGUGGGGC--------------CGCUG- -5'
7959 5' -64.9 NC_001973.1 + 124769 0.68 0.402989
Target:  5'- -gUGCGcGCGCGCUCuguucgacuaucugGCCgCCGGCGAg -3'
miRNA:   3'- gaGCGCaCGCGCGGG--------------UGG-GGCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.