miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8016 3' -63.1 NC_001973.1 + 25706 0.77 0.138853
Target:  5'- cGUCGCcgaaGCcUUGCgCGCCGcCCGCGCCGCc -3'
miRNA:   3'- -CAGCG----CGuAGCG-GCGGU-GGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 17287 0.77 0.14938
Target:  5'- aUCGCGuCGUaCGCCGCCucCCG-GCCGCa -3'
miRNA:   3'- cAGCGC-GUA-GCGGCGGu-GGCgCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 111474 0.77 0.14938
Target:  5'- -cCGCGCGUCaaguUCGUCGCCGCGCCGg -3'
miRNA:   3'- caGCGCGUAGc---GGCGGUGGCGCGGCg -5'
8016 3' -63.1 NC_001973.1 + 159241 0.77 0.153048
Target:  5'- cGUUGU-UGUCGCCGCCcuaccaacugACCGCGCCGCu -3'
miRNA:   3'- -CAGCGcGUAGCGGCGG----------UGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 28420 0.76 0.16063
Target:  5'- -gCGCGCuuggcggcCGCgGCCGCCGCcGCCGCc -3'
miRNA:   3'- caGCGCGua------GCGgCGGUGGCG-CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 22403 0.76 0.162186
Target:  5'- gGUCGCGCugggggauggggaCGaCGCCGCCGCGcCCGCg -3'
miRNA:   3'- -CAGCGCGua-----------GCgGCGGUGGCGC-GGCG- -5'
8016 3' -63.1 NC_001973.1 + 29144 0.76 0.164546
Target:  5'- -aCGagaGCcucCGCCGCCGCCGCcGCCGCc -3'
miRNA:   3'- caGCg--CGua-GCGGCGGUGGCG-CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 123590 0.76 0.168548
Target:  5'- -gCGUGCAUCGUUuccgGCCGCuCGCGUCGCa -3'
miRNA:   3'- caGCGCGUAGCGG----CGGUG-GCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 81639 0.76 0.168548
Target:  5'- gGUCGCGCG-CGCCGCUucgGCCG-GcCCGCa -3'
miRNA:   3'- -CAGCGCGUaGCGGCGG---UGGCgC-GGCG- -5'
8016 3' -63.1 NC_001973.1 + 87119 0.76 0.176814
Target:  5'- -gUGCGCGgcgugCGCgCGCCGgUGCGCCGCc -3'
miRNA:   3'- caGCGCGUa----GCG-GCGGUgGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 38577 0.75 0.181081
Target:  5'- --aGCGCAcgauUCGCCGCCGgCGCaCCGCc -3'
miRNA:   3'- cagCGCGU----AGCGGCGGUgGCGcGGCG- -5'
8016 3' -63.1 NC_001973.1 + 108332 0.75 0.185439
Target:  5'- uUUGCGCGU-GCCGCCACUGCuucuucCCGCg -3'
miRNA:   3'- cAGCGCGUAgCGGCGGUGGCGc-----GGCG- -5'
8016 3' -63.1 NC_001973.1 + 41410 0.75 0.185439
Target:  5'- uGUCGCGC---GCCGCCuCCGCGUCGg -3'
miRNA:   3'- -CAGCGCGuagCGGCGGuGGCGCGGCg -5'
8016 3' -63.1 NC_001973.1 + 69701 0.75 0.185439
Target:  5'- gGUCGaUGCAUUcgaugGCCGCCACCGCGUC-Ca -3'
miRNA:   3'- -CAGC-GCGUAG-----CGGCGGUGGCGCGGcG- -5'
8016 3' -63.1 NC_001973.1 + 2891 0.75 0.185439
Target:  5'- -aCGCGCGUCGUCGCgcuuugcuCGCCGCGCgaucguCGCg -3'
miRNA:   3'- caGCGCGUAGCGGCG--------GUGGCGCG------GCG- -5'
8016 3' -63.1 NC_001973.1 + 109173 0.75 0.189889
Target:  5'- gGUCGCccGCG-CGCuCGCCGagCGCGCCGCg -3'
miRNA:   3'- -CAGCG--CGUaGCG-GCGGUg-GCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 100385 0.75 0.189889
Target:  5'- cUCGCGCGUCGCCGCCcACCacaCGauCUGCg -3'
miRNA:   3'- cAGCGCGUAGCGGCGG-UGGc--GC--GGCG- -5'
8016 3' -63.1 NC_001973.1 + 35577 0.75 0.189889
Target:  5'- -cCGCGU-UCGCCGgcuuCUACCGCGCCGUc -3'
miRNA:   3'- caGCGCGuAGCGGC----GGUGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 109479 0.75 0.191695
Target:  5'- cGUUGCGCGagagcUuggccgaacgaacgcCGCCGCCGCCGUucGCCGCu -3'
miRNA:   3'- -CAGCGCGU-----A---------------GCGGCGGUGGCG--CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 28284 0.75 0.194432
Target:  5'- -cCGCGCcUCGUgGCgGCCgaGCGCCGCg -3'
miRNA:   3'- caGCGCGuAGCGgCGgUGG--CGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.