miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8016 3' -63.1 NC_001973.1 + 159241 0.77 0.153048
Target:  5'- cGUUGU-UGUCGCCGCCcuaccaacugACCGCGCCGCu -3'
miRNA:   3'- -CAGCGcGUAGCGGCGG----------UGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 158924 0.77 0.138853
Target:  5'- aGUCGCGCcgCGCgcgaccgaGCCGcCCGCGuCCGCg -3'
miRNA:   3'- -CAGCGCGuaGCGg-------CGGU-GGCGC-GGCG- -5'
8016 3' -63.1 NC_001973.1 + 158840 0.68 0.498185
Target:  5'- -gCGCGCGgacgaGCCGCCcaaACCGaGCuCGCg -3'
miRNA:   3'- caGCGCGUag---CGGCGG---UGGCgCG-GCG- -5'
8016 3' -63.1 NC_001973.1 + 158620 0.73 0.262559
Target:  5'- -cCGC-CGUUGCCGCCGCC-CGgCGCg -3'
miRNA:   3'- caGCGcGUAGCGGCGGUGGcGCgGCG- -5'
8016 3' -63.1 NC_001973.1 + 158527 0.78 0.122507
Target:  5'- uUUGCGC--CGCCGCCACCGCcuccuccgccuccGCCGCc -3'
miRNA:   3'- cAGCGCGuaGCGGCGGUGGCG-------------CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 158351 0.68 0.489102
Target:  5'- -cCGCGCccgCGCCGgCucgucaacCCGCGcCCGCg -3'
miRNA:   3'- caGCGCGua-GCGGCgGu-------GGCGC-GGCG- -5'
8016 3' -63.1 NC_001973.1 + 158024 0.82 0.063898
Target:  5'- aUCGgGUGUgCGCCGCCGCCGCGCCcguGCg -3'
miRNA:   3'- cAGCgCGUA-GCGGCGGUGGCGCGG---CG- -5'
8016 3' -63.1 NC_001973.1 + 157888 0.81 0.072565
Target:  5'- cUCGUGUcggagGUCGCgGCCGCCGCGcCCGCg -3'
miRNA:   3'- cAGCGCG-----UAGCGgCGGUGGCGC-GGCG- -5'
8016 3' -63.1 NC_001973.1 + 156098 0.7 0.387055
Target:  5'- --aGcCGCAgcCGCCGCCGCCGCcauuuccuCCGCa -3'
miRNA:   3'- cagC-GCGUa-GCGGCGGUGGCGc-------GGCG- -5'
8016 3' -63.1 NC_001973.1 + 155035 0.66 0.601089
Target:  5'- --gGCGCAaaccUCaCCcuuccuaGCCGCCGCGCuCGCu -3'
miRNA:   3'- cagCGCGU----AGcGG-------CGGUGGCGCG-GCG- -5'
8016 3' -63.1 NC_001973.1 + 147815 0.67 0.53522
Target:  5'- cUCGUcCuUCGagaCUGCCGCCGCcGCCGCu -3'
miRNA:   3'- cAGCGcGuAGC---GGCGGUGGCG-CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 146963 0.66 0.611729
Target:  5'- uGUUGCGCAU-GC--CCGCCGUGUCGUu -3'
miRNA:   3'- -CAGCGCGUAgCGgcGGUGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 144351 0.78 0.123113
Target:  5'- -aUGCGCGaggacgaggacgagcCGCCGCCGCCGCcGCCGCc -3'
miRNA:   3'- caGCGCGUa--------------GCGGCGGUGGCG-CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 140356 0.71 0.327277
Target:  5'- -cCGCgacacuaugaGCGUCGUCGCCGCCGaGCgGCu -3'
miRNA:   3'- caGCG----------CGUAGCGGCGGUGGCgCGgCG- -5'
8016 3' -63.1 NC_001973.1 + 137832 0.79 0.105834
Target:  5'- cGUCGCGCggCGCCGCCAUCaGCgGgCGCa -3'
miRNA:   3'- -CAGCGCGuaGCGGCGGUGG-CG-CgGCG- -5'
8016 3' -63.1 NC_001973.1 + 137689 0.68 0.471176
Target:  5'- --aGCGCAUCGUcaCGcCCGCCGUGUgggCGCc -3'
miRNA:   3'- cagCGCGUAGCG--GC-GGUGGCGCG---GCG- -5'
8016 3' -63.1 NC_001973.1 + 137554 0.69 0.427895
Target:  5'- cGUCGUaCGUCGUCGCgaGCCGCGCaaaaGUu -3'
miRNA:   3'- -CAGCGcGUAGCGGCGg-UGGCGCGg---CG- -5'
8016 3' -63.1 NC_001973.1 + 137205 0.67 0.554102
Target:  5'- -gCGCGaGUCGCgCGgCGgCGCGuCCGCa -3'
miRNA:   3'- caGCGCgUAGCG-GCgGUgGCGC-GGCG- -5'
8016 3' -63.1 NC_001973.1 + 136757 0.66 0.592401
Target:  5'- cGUCGCGCA-CGuuGCgCACgCuCGUCGUg -3'
miRNA:   3'- -CAGCGCGUaGCggCG-GUG-GcGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 133912 0.8 0.091083
Target:  5'- cUCGCGCGUCGCCGCCGCCcUGUC-Ca -3'
miRNA:   3'- cAGCGCGUAGCGGCGGUGGcGCGGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.