miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8052 3' -54.4 NC_001973.1 + 160817 0.73 0.59927
Target:  5'- aGGAUUUUACGCGUCGGCCgGAGUcgaUCAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGG-CUCG---AGUu -5'
8052 3' -54.4 NC_001973.1 + 160640 0.73 0.588759
Target:  5'- aAGAUUUUACGCGUCGGCUagggucaacaGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGG----------CUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 160561 0.73 0.557458
Target:  5'- aAGAUUUUACGCGUCGGCuagggucgauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 160405 0.75 0.467156
Target:  5'- aAGAUUUUACGCGUCGGCCggugucgaucGAGUUCAAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGG----------CUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 151370 0.85 0.128361
Target:  5'- aGGAUCUUACGCGUCGGCCGGGgUCGu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUu -5'
8052 3' -54.4 NC_001973.1 + 151085 0.75 0.486624
Target:  5'- aGGAUCCUACGCGcCcGCCGGGgUCGu -3'
miRNA:   3'- -UUUAGGAUGCGCaGuCGGCUCgAGUu -5'
8052 3' -54.4 NC_001973.1 + 150976 0.9 0.061303
Target:  5'- aAAAUCCUACGCGUCGGCCGGGgUCGu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUu -5'
8052 3' -54.4 NC_001973.1 + 150918 0.83 0.17627
Target:  5'- aAGAUCCUACGCGUCcGCCGGGgUCGu -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCgAGUu -5'
8052 3' -54.4 NC_001973.1 + 136567 0.67 0.892216
Target:  5'- aAAGUCCagcauggcgcUGCGCGcCGGCgCGAcGCUCAGc -3'
miRNA:   3'- -UUUAGG----------AUGCGCaGUCG-GCU-CGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 130971 0.7 0.735094
Target:  5'- aAGAUCUUACGCGUCGGCgaGGG-UCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGg-CUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 130892 0.73 0.567846
Target:  5'- aGGAUUUUACGCGUCGGCuagggucgauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 130794 0.82 0.195488
Target:  5'- aGGAUUUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 130716 0.76 0.411322
Target:  5'- aGGAUUUUACGCGUCGGCCGGGgcaaUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCg---AGUU- -5'
8052 3' -54.4 NC_001973.1 + 130559 0.82 0.190518
Target:  5'- aAGAUUUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 130503 0.69 0.800163
Target:  5'- aGGAUCUUACGCGUCGgcggauaacaucguGCCuaaaccGAGCUCGg -3'
miRNA:   3'- -UUUAGGAUGCGCAGU--------------CGG------CUCGAGUu -5'
8052 3' -54.4 NC_001973.1 + 129245 0.77 0.376476
Target:  5'- aAGAUCUUACGCGUCGGCaagggucauCGGGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG---------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 129166 0.74 0.506468
Target:  5'- aGGAUCUUACGCGUCGGCaagggucaaugGAGUUCAAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGg----------CUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 129000 0.73 0.59927
Target:  5'- aGGAUUUUACGCGUCGGCCaGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGcUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 127290 0.69 0.812037
Target:  5'- ---aCUgAUGCGUCGGCCGcGCUCGg -3'
miRNA:   3'- uuuaGGaUGCGCAGUCGGCuCGAGUu -5'
8052 3' -54.4 NC_001973.1 + 115301 0.67 0.877944
Target:  5'- --uUCCUGCGCGUgugucgcaccaCGGUCGuGUUCGAu -3'
miRNA:   3'- uuuAGGAUGCGCA-----------GUCGGCuCGAGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.